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| Virus* | Abbrev. names | Accn. number | Mean ENc | SD | Mean AU % | SD | Mean AU3 % | SD |
|
| Orthoretrovirinae | | | | | | | | |
| Alpharetrovirus | | | | | | | | |
| Avian carcinoma virus | ACMHV-2 | NC_001402 | 40.51 | 0.00 | 36.20 | 0.00 | 18.50 | 0.00 |
| Avian leukosis virus—RSA | ALV-A | NC_001408 | 57.09 | 3.32 | 44.80 | 7.35 | 45.23 | 9.32 |
| Avian myelocytomatosis virus | AMCV | NC_001866 | 52.79 | 0.00 | 39.60 | 0.00 | 32.00 | 0.00 |
| Fujinami sarcoma virus | FuSV | NC_001403 | 42.61 | 0.00 | 37.90 | 0.00 | 22.20 | 0.00 |
| Rous sarcoma virus | RSV | NC_001407 | 53.50 | 9.93 | 44.90 | 5.28 | 41.90 | 15.25 |
| UR2 sarcoma virus | UR2SV | NC_001618 | 55.68 | 0.59 | 53.40 | 0.00 | 56.65 | 1.77 |
| Y73 sarcoma virus | Y73SV | NC_008094 | 39.41 | 0.00 | 38.20 | 0.00 | 21.20 | 0.00 |
| Betaretrovirus | | | | | | | | |
| Enzootic nasal tumour virus of goats | ENTV-2 | NC_004994 | 49.86 | 1.36 | 57.63 | 2.33 | 70.20 | 1.53 |
| Jaagsiekte sheep retrovirus | JSRV | NC_001494 | 49.25 | 4.26 | 58.58 | 2.38 | 66.08 | 9.57 |
| Mason-Pfizer monkey virus | MPMV | NC_001550 | 50.10 | 1.31 | 57.58 | 1.27 | 68.13 | 1.60 |
| Mouse mammary tumor virus | MMTV | NC_001503 | 51.84 | 2.16 | 55.98 | 0.62 | 62.80 | 2.42 |
| Ovine enzootic nasal tumour virus | ENTV-1 | NC_007015 | 49.23 | 2.80 | 58.28 | 2.72 | 71.45 | 2.87 |
| Squirrel monkey retrovirus—HLB | SMRV-HLB | NC_001514 | 53.01 | 4.61 | 51.68 | 2.01 | 54.78 | 3.39 |
| Deltaretrovirus | | | | | | | | |
| Bovine leukemia virus | BLV | NC_001414 | 52.05 | 2.54 | 44.98 | 3.49 | 47.35 | 4.83 |
| Primate T-lymphotropic virus 1 | | | | | | | | |
| Human T-lymphotropic virus 1 | HTLV-1 | NC_001436 | 50.88 | 1.62 | 46.27 | 2.05 | 45.35 | 2.82 |
| Simian T-lymphotropic virus 1 | STLV-1 | NC_000858 | 51.09 | 2.06 | 46.73 | 2.29 | 45.80 | 3.45 |
| Primate T-lymphotropic virus 2 | | | | | | | | |
| Human T-lymphotropic virus 2 | HTLV-2 | NC_001488 | 50.04 | 1.86 | 45.58 | 3.31 | 44.46 | 3.11 |
| Simian T-lymphotropic virus 2 | STLV-2 | NC_001815 | 51.19 | 4.24 | 43.08 | 3.82 | 41.97 | 5.16 |
| Human T-lymphotropic virus 4 | HTLV-4 | NC_011800 | 50.86 | 2.71 | 42.85 | 2.62 | 40.68 | 2.23 |
| Simian T-cell lymphotropic virus 6 | STLV-6 | NC_011546 | 54.01 | 3.83 | 47.00 | 2.78 | 48.73 | 4.68 |
| Simian T-lymphotropic virus 3 | STLV-3 | NC_003323 | 55.39 | 3.72 | 44.92 | 2.73 | 44.52 | 2.31 |
| Epsilonretrovirus | | | | | | | | |
| Snakehead retrovirus | SnRV | NC_001724 | 51.88 | 7.91 | 50.31 | 4.73 | 58.46 | 4.80 |
| Walleye dermal sarcoma virus | WDSV | NC_001867 | 53.51 | 2.45 | 57.82 | 3.39 | 65.50 | 3.56 |
| Gammaretrovirus | | | | | | | | |
| Abelson murine leukemia virus | AbMLV | NC_001499 | 55.03 | 6.45 | 46.73 | 8.81 | 46.50 | 11.23 |
| Feline leukemia virus | FeLV | NC_001940 | 53.84 | 4.16 | 50.30 | 1.70 | 53.60 | 0.99 |
| Murine leukemia virus | | | | | | | | |
| Friend murine leukemia virus | FrMLV | NC_001362 | 54.95 | 1.03 | 46.70 | 1.41 | 47.70 | 1.82 |
| Moloney murine leukemia virus | MoMLV | NC_001501 | 54.72 | 0.10 | 47.00 | 1.84 | 48.77 | 2.80 |
| Murine type C retrovirus | MTCR | NC_001702 | 52.33 | 3.00 | 45.90 | 0.99 | 45.50 | 2.44 |
| Rauscher murine leukemia virus | R-MuLV | NC_001819 | 55.42 | 0.62 | 46.87 | 1.40 | 47.60 | 1.32 |
| Gibbon ape leukemia virus | GALV | NC_001885 | 55.83 | 1.34 | 47.57 | 1.16 | 48.83 | 0.67 |
| Moloney murine sarcoma virus | MOMSV | NC_001502 | 56.40 | 3.24 | 47.60 | 6.26 | 46.08 | 8.42 |
| Murine osteosarcoma virus | MuSV | NC_001506 | 49.97 | 0.98 | 42.65 | 1.77 | 37.35 | 7.14 |
| RD114 retrovirus | RD-114 | NC_009889 | 54.31 | 1.93 | 49.70 | 3.68 | 51.60 | 3.25 |
| Reticuloendotheliosis virus | REV | NC_006934 | 57.09 | 0.20 | 46.90 | 0.80 | 46.50 | 1.44 |
| Spleen focus-forming virus | SFFV | NC_001500 | 51.03 | 5.85 | 45.27 | 2.28 | 47.33 | 3.37 |
| Woolly monkey sarcoma virus | WMSV | NC_009424 | 51.39 | 8.65 | 42.60 | 4.04 | 37.97 | 13.23 |
| Xenotropic MuLV-related virus VP62 | XMRV-VP62 | NC_007815 | 52.79 | 2.41 | 46.43 | 1.29 | 46.80 | 2.18 |
| Lentivirus | | | | | | | | |
| Bovine immunodeficiency virus | BIV | NC_001413 | 53.22 | 4.43 | 53.26 | 3.60 | 57.90 | 5.35 |
| Caprine arthritis-encephalitis virus | CAEV | NC_001463 | 45.93 | 6.96 | 57.10 | 3.45 | 67.63 | 4.46 |
| Equine infectious anemia virus | EIAV | NC_001450 | 47.05 | 7.93 | 59.25 | 4.56 | 67.43 | 1.18 |
| Feline immunodeficiency virus | FIV | NC_001482 | 43.87 | 6.58 | 62.01 | 3.83 | 71.39 | 9.91 |
| Human immunodeficiency virus 1 | HIV-1 | NC_001802 | 45.05 | 4.01 | 55.49 | 4.66 | 64.78 | 7.24 |
| Human immunodeficiency virus 2 | HIV-2 | NC_001722 | 52.43 | 5.73 | 51.49 | 3.02 | 56.51 | 4.77 |
| Ovine lentivirus | OLV | NC_001511 | 44.59 | 4.47 | 57.72 | 3.78 | 65.73 | 6.90 |
| Simian immunodeficiency virus | | | | | | | | |
| Simian immunodeficiency virus | SIV | NC_001549 | 48.80 | 4.12 | 54.73 | 3.32 | 60.62 | 7.82 |
| Simian immunodeficiency virus SIV-mnd 2 | SIV-mnd-2 | NC_004455 | 51.44 | 5.83 | 54.91 | 2.63 | 58.94 | 6.43 |
| Visna/Maedi virus | VISNA | NC_001452 | 44.47 | 5.34 | 57.83 | 2.70 | 68.25 | 6.51 |
| Spumaretrovirinae | | | | | | | | |
| Bovine foamy virus | BFV | NC_001831 | 55.93 | 2.36 | 52.14 | 3.66 | 58.76 | 5.22 |
| Equine foamy virus | EFV | NC_002201 | 45.53 | 2.69 | 58.00 | 4.83 | 71.16 | 5.47 |
| Feline foamy virus | FFV | NC_001871 | 48.58 | 3.78 | 60.53 | 2.95 | 70.40 | 3.59 |
| Macaque simian foamy virus | SFVmac | NC_010819 | 46.02 | 3.01 | 58.52 | 4.92 | 73.60 | 5.31 |
| Simian foamy virus | SFV | NC_001364 | 47.94 | 3.91 | 58.03 | 4.38 | 70.58 | 8.48 |
| Simian foamy virus 3 | SFV-3 | NC_010820 | 44.33 | 3.23 | 59.50 | 5.31 | 75.20 | 4.35 |
| Unclassified retroviruses | | | | | | | | |
| Atlantic salmon swim bladder sarcoma virus | SSSV | NC_007654 | 54.69 | 2.28 | 51.70 | 3.54 | 57.90 | 6.65 |
| Avian endogenous retrovirus EAV-HP | EAV-HP | NC_005947 | 59.38 | 0.00 | 47.60 | 0.00 | 47.80 | 0.00 |
| Xenopus laevis endogenous retrovirus Xen1 | Xen-1 | NC_010955 | 59.60 | 1.80 | 53.35 | 2.76 | 58.00 | 4.11 |
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