Computational and Mathematical Methods in Medicine / 2013 / Article / Tab 3 / Research Article
Efficient Identification of Transcription Factor Binding Sites with a Graph Theoretic Approach Table 3 The developer score of the predicted binding sites in data set 1 for both our approach and the Gibbs Motif Sampler. The actual binding sites are marked by nucleotides in capital letters.
Actual binding site Binding site predicted by our approach Binding site predicted by Gibbs Motif Sampler Developer score of our approach Developer score of Gibbs Motif Sampler GAAACCctgtta AAACCC GAAACC 0.83 1.00 GAAGCCcttcaa AAGCCC GAAGCC 0.83 1.00 GAAGCCgcaaaa GAAGCC GAAGCC 1.00 1.00 GAAGCCcctcac GAAGCC GAAGCC 1.00 1.00 GAAGCCaattat GAAGCC GAAGCC 1.00 1.00 GAAGCCttagaa GAAGCC GAAGCC 1.00 1.00 GAATCCttagat GAATCC GAATCC 1.00 1.00 GAAACCttgcaa GAAACC GAAACC 1.00 1.00 GAAGCCaatcat GAAGCC GAAGCC 1.00 1.00 GAAACCttatga GAAACC GAAACC 1.00 1.00 GAAACCtttcaa GAAACC GAAACC 1.00 1.00 GAAACCatagac GAAACC GAAACC 1.00 1.00 GAAGCCttatta GAAGCC GAAGCC 1.00 1.00 GAAGCCcccaaa GAAGCC GAAGCC 1.00 1.00 GAAGCCgtagct GAAGCC GAAGCC 1.00 1.00 GAAGCCacaatt GAAGCC GAAGCC 1.00 1.00 GAAGCCgtgttt GAAGCC GAAGCC 1.00 1.00 GAAACCttatct GAAACC GAAACC 1.00 1.00 GAAGCCgtacaa GAAGCC GAAGCC 1.00 1.00 GAAGCCtacaaa GAAGCC GAAGCC 1.00 1.00 GAAACCttattt GAAACC GAAACC 1.00 1.00 GAAGCCgtaaaa GAAGCC GAAGCC 1.00 1.00 GAAGCAccttat AAGCAC GAAGCA 0.83 1.00 GAAGCCttaaaa GAAGCC GAAGCC 1.00 1.00 GAAGCCgtagat GAAGCC GAAGCC 1.00 1.00 GAAGCCactttt GAAGCC GAAGCC 1.00 1.00 GAATCCctacaa GAATCC GAATCC 1.00 1.00