Computational and Mathematical Methods in Medicine / 2013 / Article / Tab 4 / Research Article
Efficient Identification of Transcription Factor Binding Sites with a Graph Theoretic Approach Table 4 The developer score of the predicted binding sites in data set 2 for both our approach and the Gibbs Motif Sampler. The actual binding sites are marked by nucleotides in capital letters.
Actual binding site Binding site predicted by our approach Binding site predicted by Gibbs Motif Sampler Developer score of our approach Developer score of Gibbs Motif Sampler tgaatacCACGTG CACGTG CACGTG 1.00 1.00 gggatCACGTGgt CACGTG CACGTG 1.00 1.00 attgtgCACGTGg CACGTG CACGTG 1.00 1.00 CACGTGggaggtac CACGTG CACGTG 1.00 1.00 gggtCACGTGttc CACGTG CACGTG 1.00 1.00 taagCACGTGgtc CACGTG CACGTG 1.00 1.00 CACGTGccgcgcgc CACGTG CACGTG 1.00 1.00 aggtataCACGTG TACACG CACGTG 0.67 1.00 AACGTGcacatcgtcc AACGTG CACGTT 1.00 0.00 AACGTGacttcgtacc AACGTG CACGTT 1.00 0.00 CACGTGatgtcctc CACGTG CACGTG 1.00 1.00 CACGTGaagttgtc CACGTG CACGTG 1.00 1.00 AACGTGacagccctcc AACGTG CACGTT 1.00 1.00 agtCACGTGttcc CACGTG CACGTG 1.00 1.00 taaatgcCACGTG CACGTG CACGTG 1.00 1.00 tgaCACGTGtccg CACGTG CACGTG 1.00 1.00 AACGTGcgtgatgtcc AACGTG CACGTT 1.00 0.00 catgtCACGTGcc CATGTC CACGTG 0.17 1.00 aggaatCGCGTGc CGCGTG Not Found 1.00 0.00 agttcgCACGTGc CGCACG CACGTG 0.67 1.00
