Pin-Align: A New Dynamic Programming Approach to Align Protein-Protein Interaction Networks

Table 3

PPI networks from DIP and IntAct for the organism pairs (human, mouse) and (yeast, fly).

	(Human, mouse)				(Yeast, fly)
NB	0.33	0.06	65	1010	0.39	0.14	43	306
Gr2.0	0.83	0.81	228	281	0.58	0.58	155	267
MW	0.59	0.36	87	241	0.45	0.37	10	27
Gr2.0	0.88	0.86	181	210	0.90	0.91	20	30
Gr	0.59	0.53	108	203	0.33	0.29	35	122
Gr2.0	0.86	0.84	151	179	0.61	0.61	57	93
Pin-Align	0.82	0.78	258	329	0.91	0.89	416	466