ProBLM Web Server: Protein and Membrane Placement and Orientation Package

Table 1

Summary of the main differences and similarities between ProBLM and other widely used servers or tools.

Server	Membrane presentation	Manual adjustment	Overlap with lipids treatment
Charmm-GUI	Explicit	Yes	MD relaxation
VMD	Explicit	No	relaxation
PPM	Explicit	No	NA
ProBLM	Explicit and implicit	Yes	Distance cutoff