Computational and Mathematical Methods in Medicine / 2019 / Article / Tab 1

Research Article

Improved Specificity and False Discovery Rates for Multiplex Analysis of Changes in Strain-Specific Anti-Influenza IgG

Table 1

The mPlex-Flu assay panel of seasonal influenza viruses, H5 clades, and subclades.

Influenza virus typeSubtypesFull name of virusesAbbreviationH5 clades/subclades

AH1A/South Carolina/1/18A/SC18
A/Puerto Rico/8/1934A/PR8
A/USSR/90/1977A/USSR77
A/New Caledonia/20/1999A/NewCall99
A/Texas/36/1991A/Tex91
A/California/07/2009A/Cali09
H2A/Japan/305/1957A/Jap57
H3A/Port Chalmers/1/1973A/PC73
A/Hong Kong/1/1968A/HK68
A/Perth/16/2009A/Per09
A/Victoria/361/2011A/Vic11
A/Texas/50/2012A/Tex12
H5A/Hong Kong/156/97A/HK970
A/Viet Nam/1203/2004A/Viet041
A/Cambodia/P0322095/2005A/Cam051.1
A/Indonesia/5/05A/Ind052.1.3.2
A/Turkey/65596/2006A/TK062.2.1
A/Common Magpie/Hong Kong/5052/2007A/cmHK072.3.2.1
A/Shenzhen/406H/2006A/SZ062.3.4
A/Chicken/Guangxi/12/2004A/chiGX042.4
A/Chicken/Korea/es/2003A/chiKR032.5
A/Silky Chicken/Hong Kong/SF189/01A/s.chiHK013
A/Goose/Guiyang/337/2006A/gooGY064
A/Duck/Guangxi/1378/2004A/ducGX045
A/Duck/Hubei/wg/2002A/ducHB026
A/Beijing/01/2003A/BJ037.1
A/Chicken/Shanxi/2/2006A/chiSX067.2
A/Chicken/Henan/16/2004A/chiHN048
A/Goose/Shantou/1621/05A/gooST059
A/duck/Sichuan/NCXN10/2014(H5N1)A/ducSC142.3.4.4
A/turkey/Washington/61–22/2014(H5N2)A/turWash142.3.4.4
A/duck/Guangdong/wy11/2008(H5N5)A/ducGD082.3.4.4
A/turkey/California/K1500169-1.2/2015(H5N8)A/turCal152.3.4.4
H6A/chicken/Taiwan/67/2013A/chTW13
H7A/mallard/Netherlands/12/2000A/malNert00
A/rhea/North Carolina/39482/1993A/rheaNC93
H9A/guinea fowl/Hong Kong/WF10/1999A/gfHK99

BB/Brisbane/60/2008B/Bris08

HA domainsHead of A/Shanghai/1/2013H7 Head
Head of A/Indonesia/5/05H5 Head
Headof A/guinea fowl/Hong Kong/WF10/1999H9 head

Chimeric HAcH5/1 (head of A/Ind05, stalk of A/PR8)cH5/1PR
cH5/1 (head of A/Ind05, stalk of A/Cal09)cH5/1Cal
cH9/1 (head of A/gf/HK99, head of A/Cal09)cH9/1
cH4/7 (Head of A/duck/Czech/1956, stalk of A/Shanghai/1/2013)cH4/7

Note. All antigens were trimeric.

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