Identifying Heat Shock Protein Families from Imbalanced Data by Using Combined Features

Table 3

The predictive results of individual features with the jackknife test by using SVM for HSP families.

Features		HSP families						OA (%)
		HSP20	HSP40	HSP60	HSP70	HSP90	HSP100
CTF	Sn (%)	74.86	90.92	54.72	67.27	53.85	67.9	80.92
	Sp (%)	95.07	76.19	98.71	96.48	99.86	99.52
	MCC	0.7	0.68	0.63	0.66	0.69	0.75
	Acc (%)	91.79	84.68	95.5	92.75	98.76	98.35
SAAC	Sn (%)	81.07	97.53	58.49	75.9	57.69	74.07	87.25
	Sp (%)	97.7	81.06	99.36	98.26	100	99.48
	MCC	0.81	0.81	0.7	0.78	0.76	0.78
	Acc (%)	95	90.55	96.38	95.41	98.99	98.53
DC	Sn (%)	90.96	96.66	68.55	84.89	63.46	77.78	90.69
	Sp (%)	96.66	90.69	99.11	98.16	100	99.86
	MCC	0.85	0.88	0.75	0.84	0.79	0.86
	Acc (%)	95.73	94.13	96.88	96.47	99.13	99.04
PseACS	Sn (%)	92.37	95.46	75.47	87.41	67.31	83.95	91.38
	Sp (%)	99.01	89.94	98.71	98.16	99.91	99.33
	MCC	0.92	0.86	0.77	0.86	0.79	0.83
	Acc (%)	97.94	93.12	97.02	96.79	99.13	98.76