Predicting Protein-Protein Interactions via Random Ferns with Evolutionary Matrix Representation

Table 3

Five-fold cross-validation results by using two models on the Yeast dataset.

Classifier	Testing set	ACC (%)	PE (%)	SN (%)	MCC (%)	AUC (%)
SVM	1	81.63	84.29	77.73	69.91	87.06
	2	80.02	83.86	75.61	67.92	86.23
	3	79.44	80.79	76.39	67.25	84.55
	4	80.20	83.28	75.63	68.11	84.74
	5	80.69	82.83	76.83	68.72	86.34
	Average
RFs	1	95.26	99.41	91.06	90.94	94.79
	2	94.99	99.33	90.85	90.47	93.44
	3	94.81	98.81	90.55	90.12	94.11
	4	94.77	99.21	90.27	90.05	94.00
	5	95.31	98.92	91.49	91.02	94.99
	Average
Random Forest	Average
XGBoost	Average