Research Article

Computational Modeling of T Cell Hypersensitivity during Coronavirus Infections Leading to Autoimmunity and Lethality

Table 1

Twenty best docking scores (lowest binding energy) in docking experiments between CD147 receptor with crystallographic water molecules and open-state SARS-CoV-2 ligand.

ModeFree binding energy (kcal/mol)Distance from RMSD lower boundDistance from RMSD upper boundBinding residues

1-5.600Chain B: V30, D32, Q100, H102, T135, and S190
Chain D: E84, S86, T96, N98, Q100, Q164, and S190
2-5.425.50337.483Chain A: R54, E84, S86, E92, T96, R106, K127, E129, and R166
Chain B: S35 and S78
3-5.225.33337.519Chain A: R54, E84, S86, E92, T96, R106, E114, N117, E120, K127, E129, and R166
Chain B: S35, D77, and S78
Chain C: N44
4-5.214.00430.153Chain A: V30, T135, Q164, and K191
Chain B: T25, T29, V30, E31, D32, T40,and N44
Chain C: D32 and S35
Chain D: S78, H102, T135, S190, K191, and S193
5-5.227.11036.676Chain A: G58, E84, E93, N98, K127, and R166
Chain B: S35, K36, D77, and D79
Chain C: E49
6-5.125.54942.181Chain A: E84 and Q100
Chain B: S35 and K63
Chain C: E31, S42, A47, T48, E49, T51, R54, D65, and K71
7-5.11.5392.311Chain A: Y140
Chain B: T29, N98, H102, and S190
Chain D: E84, N98, Q100, E129, Q164, and S190
8-5.15.27618.087Chain A: T135 and Y140
Chain B: V30 and H102
Chain D: G58, E84, T96, N98, Q100, V134, T135, Q164, R166, and S190
9-5.124.04140.490Chain A: V30, E84, E92, N98, Q100, and H102
Chain B: L33, S35, K36, and K75
Chain C: E31, T40, N44, D45, S46, and Q70
10-5.042.95358.809Chain A: E31, S42, N44, D45, and K71
Chain C: D136, Y140, A149, N152, E155, S162, T188, S190, and K191
11-4.923.96940.989Chain A: V30, R54, G58, E84, E92, N98, H102, and S130
Chain B: K75
Chain C: E31, N44, D45, and S46
12-4.942.93758.925Chain A: E30, T40, S42, N44, D45, and K71
Chain C: D136, Y140, A149, S162, T188, S190, K191, and G192
13-4.95.44217.814Chain A: Y140
Chain B: V30, D32, I99, Q100, and H102
Chain D: K57, E84, T96, N98, Q100, K127, T135, Q164, and S190
14-4.919.68835.028Chain A: T29, V30, E84, S86, E92, T96, and Q100
Chain B: D32, G34, S35, K36, D77, S78, D79, Q81, S193, and D194
Chain C: E31, D32, S46, Q70, K71, and E73
15-4.928.14742.202Chain A: R54, G58, E84, S86, E92, T96, and Q100
Chain C: S42, N44, D45, S46, A47, V50, G69, Q70, and K71
16-4.919.78728.664Chain B: S42, N44, D45, S46, P68, Q70, and K71
Chain C: D77
Chain D: D79, D80, W82, R106, S112, T143, D144, E146, D147, Q182, R184, N186, S193, D194, Q195, and T199
17-4.93.8165.797Chain A: T135
Chain B: D32, N98, Q100, H102, T135, S189, and S190
Chain D: Q100, S130, Q164, R166, and S190
18-4.924.50835.673Chain D: K108, V110, S112, S113, K141, I142, T143, D144, P180, Q182, I197, and T199
19-4.837.42153.789Chain B: T51, R54, K63, and A66
Chain C: K57, D79, Q100, H102, G103, R106, K108, V110, K111, S113, E114, E129, and P132
20-4.843.07759.147Chain A: E31, S42, L43, N44, D45, and K71
Chain D: T135, D136, Y140, A149, N152, G153, E155, V160, S162, T188, S189, S190, and K191
21-4.423.46938.230Chain B: K63, D65, S86, and E92
Chain C: R53, K57, E84, Q100, G103, R106, and K108
22-4.323.56438.021Chain B: T51, R54, K63, D65, and E92
Chain C: R54, K57, Q100, G103, R106, K108, and E129