Identifying the Risky SNP of Osteoporosis with ID3-PEP Decision Tree Algorithm

Table 1

Part of the classification of training set.

SNP	bda	td	Enhancer	Gene region	Class
rs7524102	Y	Y	Y	Intergenic	C
rs34920465	Y	Y	Y	Control region	D
rs6426749	Y	N	Y	Control region	G
rs1430742	N	N	N	Cording sequence	B
rs6929137	Y	Y	Y	Missense	A
rs479336	Y	Y	N	Cording sequence	K
rs11898505	Y	N	Y	Intergenic	F
rs17040773	Y	Y	Y	Cording sequence	E
rs344081	Y	N	Y	Cording sequence	H
rs6909279	Y	Y	N	Intergenic	I

(a) The first column is part of osteoporosis GWAS-associated SNPs; (b) the column of “bda,” “td,” and “enhancer” means whether the SNP is on significant TFs binding affinity, mapping on distal interaction, and mapping on putative enhancer region; (c) the last column is the category the SNP belong to.