Research Article
Hypergraph Regularized Discriminative Nonnegative Matrix Factorization on Sample Classification and Co-Differentially Expressed Gene Selection
Table 9
Co-differentially expressed genes of five methods (INTA 2).
| Methods | Codifferentially expressed genes | Unique |
| NMF | CCND1 IFI27 FSCN1 LGALS3 RAC1 CLDN4 PRDX1 NOTCH3 COL1A1 HMGA1 EIF5A SERPINA3 POSTN HIF1A TP63 EGR1 SERPINB5 CDH3 KRT10 SPINK1 SLPI DUSP1 | 0 | DNMF | KRT10 SPINK1 SERPINA3 CDH3 SERPINB5 TP63 SLPI HIF1A EGR1 ANXA5 DUSP1 | 0 | LNMF | DMBT1 LDHB TFF3 HMGB1 ATF4 | 4 | GNMF | SERPINA3 COL1A1 MUC1 KRT7 MMP7 MUC6 GRN SPINK1 AGR2 | 0 | GDNMF | CCND1 IFI27 FSCN1 LGALS3 RAC1 CLDN4 PRDX1 NOTCH3 COL1A1 HMGA1 EIF5A POSTN SERPINA3 HIF1A TP63 EGR1 SERPINB5 CDH3 KRT10 SPINK1 SLPI DUSP1 | 0 | HNMF | ERBB2 CCND1 MUC1 EPCAM LGALS3 AGR2 CLDN4 IFI27 FSCN1 RAC1 DMBT1 HMGA1 NOTCH3 CD151 PRDX1 EIF5A | 0 | HDNMF | AGR2 AGT ALB ANPEP ANXA5 CCND1 CD151 CLDN4 COL1A1 CRP DMBT1 EIF5A EPCAM ERBB2 ERBB3 FSCN1 HMGA1 IFI27 KRT7 LGALS3 MMP7 MUC1 NOTCH3 PRDX1 RAC1 SERPINA3 | 5 |
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