Research Article

Hypergraph Regularized Discriminative Nonnegative Matrix Factorization on Sample Classification and Co-Differentially Expressed Gene Selection

Table 9

Co-differentially expressed genes of five methods (INTA 2).

MethodsCodifferentially expressed genesUnique

NMFCCND1 IFI27 FSCN1 LGALS3 RAC1 CLDN4 PRDX1 NOTCH3 COL1A1 HMGA1 EIF5A SERPINA3 POSTN HIF1A TP63 EGR1 SERPINB5 CDH3 KRT10 SPINK1 SLPI DUSP10
DNMFKRT10 SPINK1 SERPINA3 CDH3 SERPINB5 TP63 SLPI HIF1A EGR1 ANXA5 DUSP10
LNMFDMBT1 LDHB TFF3 HMGB1 ATF44
GNMFSERPINA3 COL1A1 MUC1 KRT7 MMP7 MUC6 GRN SPINK1 AGR20
GDNMFCCND1 IFI27 FSCN1 LGALS3 RAC1 CLDN4 PRDX1 NOTCH3 COL1A1 HMGA1 EIF5A POSTN SERPINA3 HIF1A TP63 EGR1 SERPINB5 CDH3 KRT10 SPINK1 SLPI DUSP10
HNMFERBB2 CCND1 MUC1 EPCAM LGALS3 AGR2 CLDN4 IFI27 FSCN1 RAC1 DMBT1 HMGA1 NOTCH3 CD151 PRDX1 EIF5A0
HDNMFAGR2 AGT ALB ANPEP ANXA5 CCND1 CD151 CLDN4 COL1A1 CRP DMBT1 EIF5A EPCAM ERBB2 ERBB3 FSCN1 HMGA1 IFI27 KRT7 LGALS3 MMP7 MUC1 NOTCH3 PRDX1 RAC1 SERPINA35