Review Article

Genomic Insights into the Different Layers of Gene Regulation in Yeast

Figure 3

Comparison of the TR datasets obtained by different protocols. Available TR datasets were converted to log2 values and standardized by the Z-score. The tendency line for a linear correlation is shown. The r Pearson coefficient for the correlation is provided in the top left corner of each plot. In all cases, the RP genes (blue dots) distribution differs from the global gene distribution (red dots) according to the Wilcoxon text with a P value of . GRO is the radioactive nascent TR dataset. BioGRO is an unpublished nascent TR dataset obtained with Biotin-UTP and tiling arrays (Jordán-Pla et al, unpublished). RPCC is the RNA pol II chromatin immunoprecipitation performed by us [31]. RPB3 is the RNA pol II chromatin immunoprecipitation performed by Mayer et al. [33] using an anti-RPB3 antibody.
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