Gastroenterology Research and Practice / 2013 / Article / Tab 4

Research Article

Dominant Fecal Microbiota in Newly Diagnosed Untreated Inflammatory Bowel Disease Patients

Table 4

The five well-resolved components from the MCR analysis of the results of the direct sequencing classified using the Classifier in Ribosomal Database Project II. Classification at the phylum, class, order, family, and genus levels are shown with the corresponding bootstrap confidence estimate.

PhylumClassOrderFamilyGenus

Comp_1Firmicutes
84%
Clostridia
84%
Clostridiales*  
84%
Lactinospiraceae
22%
Lactinofactor
10%
Comp_2Proteobacteria
100%
Gammaproteobacteria
100%
Enterobacteriales
100%
Enterobacteriaceae
100%
Escherichia/Shigella *  
85%
Comp_4Frimicutes
77%
Clostridia
65%
Clostridiales*  
64%
Incertae Sedis XI
15%
Parvimonas
9%
Comp_5Firmicutes
98%
Clostridia
98%
Clostridiales
98%
Ruminococcaceae
97%
Faecalibacterium *  
94%
Comp_6Bacteroidetes
100%
Bacteroidia
99%
Bacteroidales
99%
Bacteroidaceae
91%
Bacteroides *  
91%

The cut-off value of the bootstrap confidence threshold was set at 50%. Comp_1 and Comp_4 were classified at the order level whereas the other components were classified at the genus level.