A Review of the Studies and Interactions of <i>Pseudomonas syringae</i> Pathovars on Wheat

Valencia-Botín, Alberto J.; Cisneros-López, María E.

doi:https://doi.org/10.1155/2012/692350

International Journal of Agronomy

On this page

Abstract Introduction Conclusion References Copyright Related Articles

Special Issue

Management of Wheat Diseases

View this Special Issue

Review Article | Open Access

Volume 2012 | Article ID 692350 | https://doi.org/10.1155/2012/692350

A Review of the Studies and Interactions of Pseudomonas syringae Pathovars on Wheat

Alberto J. Valencia-Botín¹and María E. Cisneros-López²

Academic Editor: María Rosa Simón

Received14 Oct 2011

Revised19 Dec 2011

Accepted31 Dec 2011

Published05 Mar 2012

Abstract

Wheat is affected by some pathovars of Pseudomonas syringae and by other Pseudomonas species. Of these, P. syringae pv. syringae is the major one responsible for reduction. Recent studies have been made to characterize and identify the pathogen and to determine its aggressiveness and the pattern of colonization in seed and its effects on seed yield, yield components, and source-sink relationships during postanthesis. It was found that the reduction in the aerial biomass production is the best way to evaluate the aggressiveness of this bacterium, and the spray inoculation is good tool to make evaluations at seedling stage. The characterization of bacteria fingerprintings with molecular markers such as RAPD-PCR, ERIC, and REP-PCR is available. Genomic evolution has been elucidated with next-generation genome sequencing. Also, the colonization pattern shows that, early on, microcolonies are frequently detected in the aleurone layer, later in the endosperm and finally close to the crease and even in some cells of the embryo itself. In the wheat cultivars Seri M82 and Rebeca F2000 seed yield and its components are negatively affected. In general, P. syringae pv. syringae reduces the plant height, seed yield, and yield components, as well as the growth of most organs. When this bacterium attacks, the stems are the predominant sink organs and the leaf laminae and panicles are the predominant source organs.

1. Introduction

1.1. Global Importance of Wheat

Wheat (Triticum spp.) is one of the four major staple foods for human consumption [1, 2], ranking the first above the others for cultivated land area and yield and also providing the highest percentage of protein and carbohydrate [3–5]. While considered primarily a human food and much valued for its baking characteristics, wheat is also grown for animal feed and for industrial processing [4]. International demand for wheat is estimated to be growing at about 2% per year [4, 6]. World production exceeds 689 million tons from 25 high-producer countries [4, 7].

1.2. Importance of Wheat in Mexico

Mexico produces about 3.7 million tonnes of wheat on 0.71 million ha situated mainly in the north, southwest, central, and southeast regions. The major part (85%) of Mexico production is in the states of Sonora (35%), Guanajuato (17.5%), Baja California (11.5%), Sinaloa (9.2%), Michoacán (6.4%), and Jalisco (4.4%) where it is the fourth most important crop in terms of land area, being exceeded only by maize (Zea mays L.), beans (Phaseolus vulgaris L.), and sorghum (Sorghum bicolor [Linn.] Moench) [5]. National wheat production in Mexico in terms of the area planted and the yield per unit area has increased over the 60-year period 1925–1985 but there have been small annual declines since 1985. This has made it necessary to import 1.35 million tonnes per year to meet domestic demand with a per capita annual consumption of 54 kg [4, 8].

2. Importance of Wheat Diseases Caused by Pseudomonas Syringae and Other Pseudomonads

2.1. Generalities

There are about 50 pathovars described for P. syringae and at least nine different species or genomospecies based on DNA homology [9, 10]. The Pseudomonas strains causing the wheat disease “basal glume blotch” area are classified as Pseudomonas syringae pv. atrofaciens (McCulloch) [11] while those causing leaf blight are grouped under Pseudomonas syringae pv. syringae van Hall 1902. In many countries including Argentina, Australia, New Zealand, Italy, USA, Canada, South Africa, and Pakistan the occurrence of P. syringae pv. atrofaciens and/or pv. syringae has been reported only once [12, 13]. Diseases caused by P. syringae pv. syringae on wheat are known as dieback or leaf blight. This bacterium induces water-soaked spots on expanding leaves which become necrotic and turn from grey-green to tan-white. The entire leaves may become necrotic. During periods of high rainfall, white droplets containing cells of P. syringae pv. atrofaciens (McCulloch) may be visible causing basal glume blotch [13]. P. syringae pv. japonica (McCulloch) can cause dull, brownish-black discolored areas at the base of each glume covering the kernel, as well as blight or striated areas on the nodes. At last, Pseudomonas cichorii causes stem or shank melanosis and Pseudomonas fuscovaginae induces a black rot in the wheat sheath. In wheat, although major emphasis has been placed towards the study of diseases caused by fungus, studies of bacterial diseases such as P. syringae pv. syringae are scarce. This has delayed the development of specific information on the impact of this group of pathogens. These bacteria are considered important in cereals for their broad host range and because some of them are transmitted in the seed. The incidence of Pseudomonas syringae pv. syringae tends to be sporadic and their geographical distribution is limited [14–16]. Studies on the bacterial diseases of wheat are scarce, so only limited quantitative information on, for example, yield loss and disease epidemiology is available, especially under field conditions. P. syringae subp. syringae is considered unique among P. syringae pathovars for its ability to cause disease in at least 180 plant species from several unrelated genera [17]. Diseases caused by this bacterium, although classified as of low importance [15], have decreased yield by over 50% in Germany [18]. Maximum damage is usually associated with conditions of high humidity and low temperature [15]. The bacterium first infects the glumes, lemma, palea, and caryopsis and then invades and multiplies in the intercellular spaces of the seed tissues [19].

2.2. Losses in Grain Yield

In the field, losses in grain yield caused by Pseudomonas syringae depend on many factors including the incidence and severity of the disease, the aggressiveness of the pathogen, environmental conditions (especially temperature and humidity), the resistance or susceptibility of the host, and the phenological stage in which the infection occurs. P. syringae pv. syringae populations are almost always present epiphytically on the surfaces of wheat plants and other hosts, which indicates that weather conditions are more relevant to disease outbreaks than the presence of the inocula [13]. Internationally, yield losses range from 5 to 50% [15, 20] and, in Mexico, from 5 to 20% [21]. Moreover, it has been shown that infestation of the seed is very important in the epidemiology of the disease [12, 22]. For example, seeds inoculated with P. syringae pv. atrofaciens and P. syringae pv. syringae have been sown and these bacteria have subsequently been found in the leaf blades of the resulting seedlings, which suggests transmission by seed [23]. This demonstrates the need to ensure that wheat seed is free of plant pathogenic bacteria because, although it is unusual for all the conditions needed for extreme damage to occur in the field, the shipment of contaminated seed could spread the disease to regions where it has not previously been reported. Many seedling inoculation methods have been evaluated, and several indicators have been developed to estimate the aggressiveness of the strains of P. syringae pv. syringae. The production of aerial biomass (dry weight) at 34 days after emergence seems to be the best indicator to detect differences among the Pseudomonas strains, inoculation methods and their interactions [22], so this would seem to be the alternative method for evaluating aggressiveness when the seed is sprayed or vacuum infiltrated with the bacterium. In general, P. syringae pv. syringae reduces the wheat plant height, seed yield, and yield components, as well as the growth of most organs in wheat cultivars Seri M82 and Rebeca F2000. When this bacterium attacks, the stems are the predominant sink organs and the leaf laminae and panicles are the predominant source organs. In conclusion, it was suggested that wheat disease records caused by this bacterium should complement crop physiological variables to evaluate and to explain bacterial disease effects [24].

2.3. Study of the Pattern of Spikelet and Seed Colonization

The studies conducted by Fukuda et al. [19] on the histology of wheat seeds invasion by Pseudomonas syringae pv. japonica indicate that the bacteria colonize first the lemma and palea, then continue to invade the funiculus caryopsis, and then multiply in the intercellular spaces. The sequence and the timing with which the seed tissues are infected have not been explained in detail. Reporter genes can be used to detect changes in plant tissues. The principle of their use is that the amount of protein quantified is a measure of gene expression. The reporter gene for the enzyme β-glucuronidase (GUS) has been used in various plant species but its use has not been reported for determining patterns of colonization of seeds by pathogenic bacteria [25]. Experiments with the GUS gene require destructive sampling, making it impossible to carry out multiple analyses on the same piece of tissue [26]. The use of green fluorescent protein (GFP) overcomes some of the disadvantages of GUS gene detection. The GFP was first discovered in 1962 [27] and was isolated in its natural form from the jellyfish (Aequorea victoria). It is characterized as a polypeptide of 27 kDa, which converts the blue chemiluminescence of the Ca²⁺ plus aequorin (a naturally luminescent protein) into blue light [28]. The main advantage in using GFP over GUS is that it can be detected nondestructively in living tissues and even in individual cells, whereas the GUS enzyme activity is often expressed as patches around the tissue under observation, as well as in transformed cells [29]. In plant pathology, the use of the gfp gene is increasing. For example, Sexton and Howlett [30] determined that the fungus Leptosphaeria maculans can colonize and cause symptoms specifically in the cotyledons and stems of Brassica spp., and Du et al. [31] were able to identify and quantify the accumulation of aflatoxins in corn caused by Aspergillus flavus.

In wheat seeds inoculated with Streptomyces sp. transformed with the gfp gene, Coombs and Franco [32] determined that pathogen causes infection in the tissue of the embryo, endosperm, and radicle. Similarly, studies with pathogens marked with the gfp gene in yeast have allowed visualization of expression and confirm the usefulness of the gfp gene as a reporter in the study of plant diseases [33, 34]. We have used the gfp reporter genes to detect microorganisms and to study biological properties [23]. The pattern of colonization by P. syringae pv. syringae in wheat was recently elucidated [23]. One strain of this bacterium was transformed to express the GFP in wheat. The gfp-tagged bacteria showed strong GFP expression when visualized under green light. After 6 h it was detected in the aleurone layer and, 24 h later, in the endosperm cells. By 36 h it was close to the crease and by 48 h it appeared as patches in some cells of the embryo tissue.

3. Taxonomy of Wheat Pathogenic Pseudomonas

The genus Pseudomonas sensu lato has been subdivided based on rRNA-DNA hybridization, 16S rRNA sequence comparisons, and multilocus sequence typing [35–38]. Phytopathogenic fluorescent Pseudomonas representatives are grouped in the genus Pseudomonas sensu stricto, within rRNA similarity group I for γ-Proteobacteria subclass [39]. Most members of this group are saprophytic Pseudomonas and are metabolically and physiologically versatile [40]. Revisions of the genus Pseudomonas differentiation is provided in detail by Kersters et al., Silva-Rojas, and Anzai et al. who reported five rRNA homology groups, highlighting their importance in phytopathogenic groups I, II, III, and V [35, 41, 42]. Pseudomonas syringae is genetically diverse and is subclassified into approximately 50 pathovars and at least nine genomospecies based on pathogenicity and host range and DNA homology [10, 43, 44]. It is a bacillary bacterium, negative, mobile with a polar flagella, and strictly aerobic. In solid King B medium it produces a green fluorescent pigment under UV irradiation resulting in a former case of grouping [45]. The characterization and identification of this species, in addition to biochemical tests, can be accomplished with commercial systems such as API-50CH, 50AO, and 50AA, BIOLOG (Biolog Inc., Hayward, USA), and Biotype 100 (bioMérieux, La Balme Les Grottes, France) has been used to determine the ability of isolates to assimilate or oxidize a wide range of organic compounds in the presence of tetrazolium salt. However, with the application of such tools it has still not been possible to distinguish between P. syringae pv. syringae and P. syringae pv. japonica, making it necessary to rely on results of molecular tests.

In this sense, to identify pathogenic bacteria, particularly of the genus Xanthomonas and, the technique of repeated sequences (REP-PCR) has been used successfully to identify X. translucens [46] and other species of this genus [47, 48]. Fatty acid methyl ester (FAME) analysis has been applied to distinguish Pseudomonas syringae but it was not conclusive for this genus [45]. At this moment, no research using repeated sequences like ERIC and REP or FAME analysis has been used to distinguish Pseudomonas syringae pathovars affecting wheat worldwide. Other molecular tools, like DNA genomic restriction fragment length polymorphism (RFLP) analysis of DNA by pulsed field gel electrophoresis and ELISA-PCR, have also been used for genomic characterization of bacteria on wheat [15]. Direct sequencing of the amplification product of the small subunit ribosomal 16S rRNA is a discriminative method that identifies strains of prokaryotes rapidly [49, 50]. This subunit is a characteristic universally distributed among all prokaryotic species [51]. The respective sequence is compared with the GenBank database (National Center for Biotechnology Information, NCBI) which establishes phylogenetic relationships and results in a prompt identification. Our understanding of the evolution of plant pathogenesis in Pseudomonas syringae strains has further improved by next-generation genome sequencing [52]. It is possible to identify P. syringae pv. syringae on the basis of amplifying and sequencing the small 16 rRNA subunit. However, results are unavailable for the application of molecular markers like RAPD-PCR to characterize and identify plant pathogenic bacterial strains in wheat [53].

4. Conclusion

The main control measures for plant diseases caused by pathogens are crop rotations with nonhost species, inoculation with antagonistic bacteria (e.g., fluorescent Pseudomonas genus), seed production in areas free of the disease, and plant breeding for resistance. In Mexico there are not yet any effective treatments for the control of basal glume blotch in wheat caused by Pseudomonas syringae pv. syringae. In experiments in Egypt and Russia, which assess the resistance of wheat genotypes to diseases caused by P. syringae pv. syringae and P. syringae pv. atrofaciens, sources of genetic resistance have been found in the varieties Sakha 69, Len, Marchal, Nowesta, Red River 68, Bounty 208, Bonanza and Alex as well as in species of the Aegilops grasses. The evaluation of alternative controls using physical and chemical measures has been shown not to be feasible for large amounts of seed and is anyway considered likely to impair its viability or not to have sufficient efficacy to be worthwhile. Therefore, at this stage it is important to use healthy seed, from an uninfected crop, grown in an upland area.

References

D. J. D. Ávila, H. V. C. Santoyo, R. R. Schwentesius, and V. H. M. Palacio, El Mercado del Trigo en Mexico ante el TLCAN, Centro de Investigaciones Económicas, Sociales y Tecnológicas de la Agroindustria y la Agricultura Mundial (CIESTAAM-PIAI), Universidad Autónoma Chapingo, Chapingo, Mexico, 2001.
P. K. Anderson, A. A. Cunningham, N. G. Patel, F. J. Morales, P. R. Epstein, and P. Daszak, “Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers,” Trends in Ecology & Evolution, vol. 19, no. 10, pp. 535–544, 2004.
View at: Publisher Site | Google Scholar
S. C. Wayne, Crop Production. Evolution, History and Technology, John Wiley & Sons, New York, NY, USA, 1995.
H. E. Villaseñor, “Importancia del trigo,” in El Trigo de Temporal en Mexico, H. E. Villaseñor and E. Espitia, Eds., pp. 7–24, INIFAP, CIR-CENTRO, Centro, Mexico, 2000.
View at: Google Scholar
FAOSTAT, “Production, crops,” 2010, http://faostat.fao.org/site/339/default.aspx.
View at: Google Scholar
K. D. Sayre, S. Rajaram, and R. A. Fischer, “Yield potential progress in short bread wheats in North West Mexico,” Crop Science, vol. 37, no. 1, pp. 36–42, 1997.
View at: Google Scholar
United States Department of Agriculture, “World agricultural supply and demand estimates,” WASDE, 501, 2011, http://www.usda.gov/oce/commodity/wasde/latest.pdf.
View at: Google Scholar
P. L. Pingali and S. Rajaram, “Global wheat research in a changing world: options for sustaining growth in wheat productivity,” in 1998-99 World Facts and Trends, Global Wheat Research in a Changing World: Challenges and Achievements, P. L. Pingali, Ed., pp. 1–18, Centro Internacional de Mejoramiento de Maíz y Trigo, El Batán, Mexico, 1999.
View at: Google Scholar
L. Cardan, H. Shafik, S. Belouin, R. Broch, F. Grimont, and P. A. Grimont, “DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959),” International Journal of Systematic Bacteriology, vol. 49, no. 2, pp. 469–478, 1999.
View at: Google Scholar
J. L. Vanneste, D. A. Cornish, J. Yu, and C. E. Morris, “The application of polymerase chain reaction for characterising strains of Pseudomonas syringae isolated from New Zealand rivers,” New Zealand Plant Protection, vol. 62, pp. 256–261, 2009.
View at: Google Scholar
J. M. Young, D. W. Dye, J. F. Bradbury, C. G. Panagopoulus, and C. F. Robbs, “A proposed nomenclature and classification for plant pathogenic bacteria,” Journal of Agricultural Research, vol. 21, no. 1, pp. 153–177, 1978.
View at: Google Scholar
J. von Kietzell and K. Rudolph, “Epiphytic occurrence of Pseudomonas syringae pv. atrofaciens,” in Pseudomonas syringae Pathovars and Related Pathogens, K. Rudolph, T. J. Burr, J. Mansfield, D. Stead, A. Vivian, and J. von Kietzell, Eds., pp. 29–34, Kluwer Academic, Dodrecht, The Netherlands, 1997.
View at: Google Scholar
M. N. Kazempour, M. Kheyrgoo, H. Pedramfar, and H. Rahimian, “Isolation and identification of bacterial glum blotch and leaf blight on wheat (Triticum aestivum L.) in Iran,” African Journal of Biotechnology, vol. 9, no. 20, pp. 2860–2865, 2010.
View at: Google Scholar
M. Diekmann and C. A. J. Putter, Eds., Technical Guidelines for the Safe Movement of Germoplasm. Small Grain Temperate Cereals. No. 14, Food and Agriculture Organization of the United Nations, Rome/International Plant Genetic Resources Institute, Rome, Italy, 1995.
J. von Kietzell and K. Rudolph, “Wheat diseases caused by Pseudomonas syringae pathovars,” in The Bacterial Diseases of Wheat. Concepts and Methods of Disease Management, E. Duveiller, L. Fucikovsky, and K. Rudolph, Eds., pp. 49–57, Centro Internacional de Mejoramiento de Maíz y Trigo, El Batán, Mexico, 1997.
View at: Google Scholar
P. D. Hernández, Enfermedades de maíz (Zea mays L.), trigo (Triticum aestivum L.) y cebada (Hordeum vulgare L.) presentes en Mexico, Tesis de Licenciatura, Universidad Autónoma Chapingo, Chapingo, Mexico, 1998.
E. L. Little, R. M. Bostock, and B. C. Kirkpatrick, “Genetic characterization of Pseudomonas syringae pv. syringae strains from stone fruits in California,” Applied and Environmental Microbiology, vol. 64, no. 10, pp. 3818–3823, 1998.
View at: Google Scholar
H. Toben, A. Mavridis, and K. W. E. Rudolph, “On the occurrence of basal glume root wheat and barley caused by Pseudomonas syringae pv. atrofaciens in West Germany,” Journal of Plant Disease and Protection, vol. 98, no. 3, pp. 225–235, 1991.
View at: Google Scholar
T. Fukuda, K. Azegami, and H. Tabel, “Histological studies on bacterial black node of barley and wheat caused by Pseudomonas syringae pv. japonica,” Annals of the Phytopathological Society of Japan, vol. 56, no. 2, pp. 252–256, 1990.
View at: Google Scholar
R. L. Forster and N. W. Schaad, “Control of black chaff of wheat with seed treatment and a foundation seed health program,” Plant Disease, vol. 72, pp. 935–938, 1988.
View at: Google Scholar
E. Duveiller and H. Maraite, “Study of yield loss due to Xanthomonas campestris pv. undulosa in wheat under high rainfall temperate conditions,” Journal of Plant Disease and Protection, vol. 100, no. 5, pp. 453–459, 1993.
View at: Google Scholar
A. J. Valencia-Botín, L. E. Mendoza-Onofre, H. V. Silva-Rojas et al., “Indicadores de agresividad y métodos de inoculación con bacterias fitopatógenas en plántulas y semillas de trigo ‘Seri M82’,” Revista Fitotecnia Mexicana, vol. 30, no. 3, pp. 255–259, 2007.
View at: Google Scholar
H. A. Zavaleta-Mancera, A. J. Valencia-Botín, L. E. Mendoza-Onofre, H. V. Silva-Rojas, and E. Valadez-Moctezuma, “Use of green fluorescent protein to monitor the colononization of Pseudomonas syringae subsp. syringae on wheat seeds,” Microscopy and Microanalysis Journal, vol. 13, no. S02, pp. 298–299, 2007.
View at: Publisher Site | Google Scholar
A. J. Valencia-Botín, L. E. Mendoza-Onofre, H. V. Silva-Rojas, E. Valadez-Moctezuma, L. Cordova-Tellez, and H. E. Villaseñor-Mir, “Effect of Pseudomonas syringae subsp. syringae on yield and biomass distribution in wheat,” Spanish Journal of Agricultural Research, vol. 9, no. 4, pp. 1287–1297, 2011.
View at: Google Scholar
R. A. Jefferson, T. A. Kavanagh, and M. W. Bevan, “GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants,” The EMBO Journal, vol. 6, no. 13, pp. 3901–3907, 1987.
View at: Google Scholar
M. T. Buenrostro-Nava, Characterization of GFP gene expression using an automated image collection system and image analysis, Ph.D. thesis, The Ohio State University, Columbus, Ohio, USA, 2002.
O. Shimomura, F. H. Johnson, and Y. Saiga, “Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan Aequorea,” Journal of Cellular and Comparative Physiology, vol. 59, pp. 223–239, 1962.
View at: Google Scholar
M. Chalfie, Y. Tu, G. Euskirchen, W. W. Ward, and D. C. Prasher, “Green fluorescent protein as a marker for gene expression,” Science, vol. 263, no. 5148, pp. 802–805, 1994.
View at: Google Scholar
B. Bohanec, Z. Luthar, and K. Rudolf, “A protocol for quantitative analysis of green fluorescent protein-transformed plants, using multiparameter flow cytometry with cluster analysis,” Acta Biologica Cracoviensia Series Botanica, vol. 44, pp. 145–153, 2002.
View at: Google Scholar
A. C. Sexton and B. J. Howlett, “Green fluorescent protein as a reporter in the Brassica-Leptosphaeria maculans interaction,” Physiological and Molecular Plant Pathology, vol. 58, no. 1, pp. 13–21, 2001.
View at: Publisher Site | Google Scholar
W. Du, Z. Huang, J. E. Flaherty, K. Wells, and G. A. Payne, “Green fluorescent protein as a reporter to monitor gene expression and food colonization by Aspergillus flavus,” Applied and Environmental Microbiology, vol. 65, no. 2, pp. 834–836, 1999.
View at: Google Scholar
J. T. Coombs and C. M. Franco, “Visualization of an endophytic Streptomyces species in wheat seed,” Applied and Environmental Microbiology, vol. 69, no. 7, pp. 4260–4262, 2003.
View at: Publisher Site | Google Scholar
N. Chen, T. Hsiang, and P. H. Goodwin, “Use of green fluorescent protein to quantify the growth of Colletotrichum during infection of tobacco,” Journal of Microbiological Methods, vol. 53, no. 1, pp. 113–122, 2003.
View at: Publisher Site | Google Scholar
L. Oren, S. Ezrati, D. Cohen, and A. Sharon, “Early events in the Fusarium verticillioides-maize interaction characterized by using a green fluorescent protein-expressing transgenic isolate,” Applied and Environmental Microbiology, vol. 69, no. 3, pp. 1695–1701, 2003.
View at: Publisher Site | Google Scholar
K. Kersters, W. Ludwig, M. Vancanneyt, P. de Vos, M. Gillis, and K. H. Schleifer, “Recent changes in the classification of the Pseudomonas: an overview,” Systematic and Applied Microbiology, vol. 19, no. 4, pp. 465–477, 1996.
View at: Google Scholar
N. J. Palleroni, R. W. Ballard, E. Ralston, and M. Doudoroff, “Deoxyribonucleic acid homologies among some Pseudomonas species,” Journal of Bacteriology, vol. 110, no. 1, pp. 1–11, 1972.
View at: Google Scholar
A. Willems, P. de Vos, M. Gillis, and K. Kersters, “Towards an improved classification of Pseudomonas sp.,” Society for Applied Bacteriology Technical Series, vol. 29, pp. 21–43, 1992.
View at: Google Scholar
C. T. Bull, C. R. Clarke, R. Cai, B. A. Vinatzer, T. M. Jardini, and S. T. Koike, “Multilocus sequence typing of Pseudomonas syringae sensu lato confirms previously described genomospecies and permits rapid identification of P. syringae pv. coriandricola and P. syringae pv. apii causing bacterial leaf spot on parsley,” Phytopathology, vol. 101, no. 7, pp. 847–858, 2011.
View at: Publisher Site | Google Scholar
N. J. Palleroni, “Genus I. Pseudomonas Migula 1984,” in Bergey's Manual of Systematic Bacteriology, N. R. Krieg and J. G. Holt, Eds., pp. 141–149, Williams & Wilkins, Baltimore, Md, USA, 1984.
View at: Google Scholar
C. Weinel, Comparative and functional genome analysis of Pseudomonas putida KT2440, Ph.D. thesis, University of Hannover, Hanover, Germany, 2003.
H. V. Silva-Rojas, Caracterización de bacterias fitopatógenas causantes de manchas foliares en el cultivo de frijol (Phaseolus vulgaris L.) en Mexico, Tesis de Doctor en Ciencias, Colegio de Postgraduados, Montecillo, Mexico, 2000.
Y. Anzai, H. Kim, J. Park, H. Wakabayashi, and H. Oyaizu, “Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence,” International Journal of Systematic and Evolutionary Microbiology, vol. 50, no. 4, pp. 1563–1589, 2000.
View at: Google Scholar
K. W. E. Rudolph, “Pseudomonas syringae pathovars,” in Pathogenesis and Host Specificity in Plant Diseases, R. P. Singh and K. Kohmoto, Eds., vol. I of Prokaryotes, pp. 47–138, Elsevier Science, Oxford, UK, 1995.
View at: Google Scholar
H. Sawada, F. Suzuki, I. Matsuda, and N. Saitou, “Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster,” Journal of Molecular Evolution, vol. 49, no. 5, pp. 627–644, 1999.
View at: Google Scholar
B. Slabbinck, B. de Baets, P. Dawyndt, and P. de Vos, “Analysis of plant-pathogenic Pseudomonas species using intelligent learning methods: a general focus on taxonomy and fatty acid analysis within the genus Pseudomonas,” Revista Mexicana de Fitopatología, vol. 28, pp. 1–16, 2010.
View at: Google Scholar
M. Maes and P. Garbeva, “Detection of bacterial phytopathogens based on nucleic acid technology,” Parasitica, vol. 50, no. 1-2, pp. 75–80, 1994.
View at: Google Scholar
F. J. Louws, J. L. W. Rademaker, and F. J. de Bruijn, “The three DS of PCR-based genomic analysis of phytobacteria: diversity detection, and disease diagnosis,” Annual Review of Phytopathology, vol. 37, pp. 81–125, 1999.
View at: Publisher Site | Google Scholar
C. Bragard, From immunological detection and identification to phenotypic and genotypic characterization of Xanthomonads pathogenic for small grains, Ph.D. thesis, Faculté des Sciences Agronomiques, Université Catholique de Louvain, Louvain-la-Neuve, Belgium, 1996.
B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Biología Molecular de la Célula, Ediciones Omega S. A., Barcelona, Spain, 3rd edition, 1996.
M. D. R. Rodicio and M. D. C. Mendoza, “Identificación bacteriana mediante secuenciación del ARNr 16S: fundamento, metodología y aplicaciones en microbiología clínica,” Enfermedades Infecciosas y Microbiologia Clinica, vol. 22, no. 4, pp. 238–245, 2004.
View at: Publisher Site | Google Scholar
D. Gevers, F. M. Cohan, J. G. Lawrence et al., “Re-evaluating prokaryotic species,” Nature Reviews, vol. 3, no. 9, pp. 733–739, 2005.
View at: Publisher Site | Google Scholar
H. E. O'Brien, S. Thakur, and D. S. Guttman, “Evolution of plant pathogenesis in Pseudomonas syringae: a genomics perspective,” Annual Review of Phytopathology, vol. 49, pp. 269–289, 2011.
View at: Publisher Site | Google Scholar
A. J. Valencia-Botín, Caracterización, identificación, colonización y repercusión agronómica de bacterias fitopatógenas en trigo, Tesis de Doctor en Ciencias, Colegio de Postgraduados, Montecillo, Mexico, 2007.

Copyright

Copyright © 2012 Alberto J. Valencia-Botín and María E. Cisneros-López. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

PDF Download Citation

Download other formats

Order printed copies

Views

5836

Downloads

2994

Citations