International Journal of Biomedical Imaging https://www.hindawi.com The latest articles from Hindawi © 2017 , Hindawi Limited . All rights reserved. An Automatic Image Processing System for Glaucoma Screening Tue, 29 Aug 2017 07:49:40 +0000 http://www.hindawi.com/journals/ijbi/2017/4826385/ Horizontal and vertical cup to disc ratios are the most crucial parameters used clinically to detect glaucoma or monitor its progress and are manually evaluated from retinal fundus images of the optic nerve head. Due to the rarity of the glaucoma experts as well as the increasing in glaucoma’s population, an automatically calculated horizontal and vertical cup to disc ratios (HCDR and VCDR, resp.) can be useful for glaucoma screening. We report on two algorithms to calculate the HCDR and VCDR. In the algorithms, level set and inpainting techniques were developed for segmenting the disc, while thresholding using Type-II fuzzy approach was developed for segmenting the cup. The results from the algorithms were verified using the manual markings of images from a dataset of glaucomatous images (retinal fundus images for glaucoma analysis (RIGA dataset)) by six ophthalmologists. The algorithm’s accuracy for HCDR and VCDR combined was 74.2%. Only the accuracy of manual markings by one ophthalmologist was higher than the algorithm’s accuracy. The algorithm’s best agreement was with markings by ophthalmologist number 1 in 230 images (41.8%) of the total tested images. Ahmed Almazroa, Sami Alodhayb, Kaamran Raahemifar, and Vasudevan Lakshminarayanan Copyright © 2017 Ahmed Almazroa et al. All rights reserved. Quantitative Evaluation of Temporal Regularizers in Compressed Sensing Dynamic Contrast Enhanced MRI of the Breast Mon, 28 Aug 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/7835749/ Purpose. Dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) is used in cancer imaging to probe tumor vascular properties. Compressed sensing (CS) theory makes it possible to recover MR images from randomly undersampled -space data using nonlinear recovery schemes. The purpose of this paper is to quantitatively evaluate common temporal sparsity-promoting regularizers for CS DCE-MRI of the breast. Methods. We considered five ubiquitous temporal regularizers on 4.5x retrospectively undersampled Cartesian in vivo breast DCE-MRI data: Fourier transform (FT), Haar wavelet transform (WT), total variation (TV), second-order total generalized variation (), and nuclear norm (NN). We measured the signal-to-error ratio (SER) of the reconstructed images, the error in tumor mean, and concordance correlation coefficients (CCCs) of the derived pharmacokinetic parameters (volume transfer constant) and (extravascular-extracellular volume fraction) across a population of random sampling schemes. Results. NN produced the lowest image error (SER: 29.1), while produced the most accurate (CCC: 0.974/0.974) and (CCC: 0.916/0.917). WT produced the highest image error (SER: 21.8), while FT produced the least accurate (CCC: 0.842) and (CCC: 0.799). Conclusion. should be used as temporal constraints for CS DCE-MRI of the breast. Dong Wang, Lori R. Arlinghaus, Thomas E. Yankeelov, Xiaoping Yang, and David S. Smith Copyright © 2017 Dong Wang et al. All rights reserved. An Automatic Gastrointestinal Polyp Detection System in Video Endoscopy Using Fusion of Color Wavelet and Convolutional Neural Network Features Mon, 14 Aug 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/9545920/ Gastrointestinal polyps are considered to be the precursors of cancer development in most of the cases. Therefore, early detection and removal of polyps can reduce the possibility of cancer. Video endoscopy is the most used diagnostic modality for gastrointestinal polyps. But, because it is an operator dependent procedure, several human factors can lead to misdetection of polyps. Computer aided polyp detection can reduce polyp miss detection rate and assists doctors in finding the most important regions to pay attention to. In this paper, an automatic system has been proposed as a support to gastrointestinal polyp detection. This system captures the video streams from endoscopic video and, in the output, it shows the identified polyps. Color wavelet (CW) features and convolutional neural network (CNN) features of video frames are extracted and combined together which are used to train a linear support vector machine (SVM). Evaluations on standard public databases show that the proposed system outperforms the state-of-the-art methods, gaining accuracy of 98.65%, sensitivity of 98.79%, and specificity of 98.52%. Mustain Billah, Sajjad Waheed, and Mohammad Motiur Rahman Copyright © 2017 Mustain Billah et al. All rights reserved. Corrigendum to “Automated Feature Extraction in Brain Tumor by Magnetic Resonance Imaging Using Gaussian Mixture Models” Sun, 13 Aug 2017 08:33:07 +0000 http://www.hindawi.com/journals/ijbi/2017/3247974/ Ahmad Chaddad, Markus Luedi, Pascal O. Zinn, and Rivka Colen Copyright © 2017 Ahmad Chaddad et al. All rights reserved. An Improved Extrapolation Scheme for Truncated CT Data Using 2D Fourier-Based Helgason-Ludwig Consistency Conditions Thu, 20 Jul 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/1867025/ We improve data extrapolation for truncated computed tomography (CT) projections by using Helgason-Ludwig (HL) consistency conditions that mathematically describe the overlap of information between projections. First, we theoretically derive a 2D Fourier representation of the HL consistency conditions from their original formulation (projection moment theorem), for both parallel-beam and fan-beam imaging geometry. The derivation result indicates that there is a zero energy region forming a double-wedge shape in 2D Fourier domain. This observation is also referred to as the Fourier property of a sinogram in the previous literature. The major benefit of this representation is that the consistency conditions can be efficiently evaluated via 2D fast Fourier transform (FFT). Then, we suggest a method that extrapolates the truncated projections with data from a uniform ellipse of which the parameters are determined by optimizing these consistency conditions. The forward projection of the optimized ellipse can be used to complete the truncation data. The proposed algorithm is evaluated using simulated data and reprojections of clinical data. Results show that the root mean square error (RMSE) is reduced substantially, compared to a state-of-the-art extrapolation method. Yan Xia, Martin Berger, Sebastian Bauer, Shiyang Hu, Andre Aichert, and Andreas Maier Copyright © 2017 Yan Xia et al. All rights reserved. Corrigendum to “Automatic Characterization of the Physiological Condition of the Carotid Artery in 2D Ultrasound Image Sequences Using Spatiotemporal and Spatiospectral 2D Maps” Wed, 28 Jun 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/4237858/ Hamed Hamid Muhammed and Jimmy C. Azar Copyright © 2017 Hamed Hamid Muhammed and Jimmy C. Azar. All rights reserved. Intraoperative Imaging Modalities and Compensation for Brain Shift in Tumor Resection Surgery Mon, 05 Jun 2017 08:15:54 +0000 http://www.hindawi.com/journals/ijbi/2017/6028645/ Intraoperative brain shift during neurosurgical procedures is a well-known phenomenon caused by gravity, tissue manipulation, tumor size, loss of cerebrospinal fluid (CSF), and use of medication. For the use of image-guided systems, this phenomenon greatly affects the accuracy of the guidance. During the last several decades, researchers have investigated how to overcome this problem. The purpose of this paper is to present a review of publications concerning different aspects of intraoperative brain shift especially in a tumor resection surgery such as intraoperative imaging systems, quantification, measurement, modeling, and registration techniques. Clinical experience of using intraoperative imaging modalities, details about registration, and modeling methods in connection with brain shift in tumor resection surgery are the focuses of this review. In total, 126 papers regarding this topic are analyzed in a comprehensive summary and are categorized according to fourteen criteria. The result of the categorization is presented in an interactive web tool. The consequences from the categorization and trends in the future are discussed at the end of this work. Siming Bayer, Andreas Maier, Martin Ostermeier, and Rebecca Fahrig Copyright © 2017 Siming Bayer et al. All rights reserved. Monte Carlo Simulation for Polychromatic X-Ray Fluorescence Computed Tomography with Sheet-Beam Geometry Mon, 08 May 2017 09:44:10 +0000 http://www.hindawi.com/journals/ijbi/2017/7916260/ X-ray fluorescence computed tomography (XFCT) based on sheet beam can save a huge amount of time to obtain a whole set of projections using synchrotron. However, it is clearly unpractical for most biomedical research laboratories. In this paper, polychromatic X-ray fluorescence computed tomography with sheet-beam geometry is tested by Monte Carlo simulation. First, two phantoms ( and ) filled with PMMA are used to simulate imaging process through GEANT 4. Phantom contains several GNP-loaded regions with the same size (10 mm) in height and diameter but different Au weight concentration ranging from 0.3% to 1.8%. Phantom contains twelve GNP-loaded regions with the same Au weight concentration (1.6%) but different diameter ranging from 1 mm to 9 mm. Second, discretized presentation of imaging model is established to reconstruct more accurate XFCT images. Third, XFCT images of phantoms and are reconstructed by filter back-projection (FBP) and maximum likelihood expectation maximization (MLEM) with and without correction, respectively. Contrast-to-noise ratio (CNR) is calculated to evaluate all the reconstructed images. Our results show that it is feasible for sheet-beam XFCT system based on polychromatic X-ray source and the discretized imaging model can be used to reconstruct more accurate images. Shanghai Jiang, Peng He, Luzhen Deng, Mianyi Chen, and Biao Wei Copyright © 2017 Shanghai Jiang et al. All rights reserved. Fast Compressed Sensing MRI Based on Complex Double-Density Dual-Tree Discrete Wavelet Transform Sun, 09 Apr 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/9604178/ Compressed sensing (CS) has been applied to accelerate magnetic resonance imaging (MRI) for many years. Due to the lack of translation invariance of the wavelet basis, undersampled MRI reconstruction based on discrete wavelet transform may result in serious artifacts. In this paper, we propose a CS-based reconstruction scheme, which combines complex double-density dual-tree discrete wavelet transform (CDDDT-DWT) with fast iterative shrinkage/soft thresholding algorithm (FISTA) to efficiently reduce such visual artifacts. The CDDDT-DWT has the characteristics of shift invariance, high degree, and a good directional selectivity. In addition, FISTA has an excellent convergence rate, and the design of FISTA is simple. Compared with conventional CS-based reconstruction methods, the experimental results demonstrate that this novel approach achieves higher peak signal-to-noise ratio (PSNR), larger signal-to-noise ratio (SNR), better structural similarity index (SSIM), and lower relative error. Shanshan Chen, Bensheng Qiu, Feng Zhao, Chao Li, and Hongwei Du Copyright © 2017 Shanshan Chen et al. All rights reserved. Phase Segmentation Methods for an Automatic Surgical Workflow Analysis Sun, 19 Mar 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/1985796/ In this paper, we present robust methods for automatically segmenting phases in a specified surgical workflow by using latent Dirichlet allocation (LDA) and hidden Markov model (HMM) approaches. More specifically, our goal is to output an appropriate phase label for each given time point of a surgical workflow in an operating room. The fundamental idea behind our work lies in constructing an HMM based on observed values obtained via an LDA topic model covering optical flow motion features of general working contexts, including medical staff, equipment, and materials. We have an awareness of such working contexts by using multiple synchronized cameras to capture the surgical workflow. Further, we validate the robustness of our methods by conducting experiments involving up to 12 phases of surgical workflows with the average length of each surgical workflow being 12.8 minutes. The maximum average accuracy achieved after applying leave-one-out cross-validation was 84.4%, which we found to be a very promising result. Dinh Tuan Tran, Ryuhei Sakurai, Hirotake Yamazoe, and Joo-Ho Lee Copyright © 2017 Dinh Tuan Tran et al. All rights reserved. A Novel Histogram Region Merging Based Multithreshold Segmentation Algorithm for MR Brain Images Thu, 16 Mar 2017 07:11:37 +0000 http://www.hindawi.com/journals/ijbi/2017/9759414/ Multithreshold segmentation algorithm is time-consuming, and the time complexity will increase exponentially with the increase of thresholds. In order to reduce the time complexity, a novel multithreshold segmentation algorithm is proposed in this paper. First, all gray levels are used as thresholds, so the histogram of the original image is divided into 256 small regions, and each region corresponds to one gray level. Then, two adjacent regions are merged in each iteration by a new designed scheme, and a threshold is removed each time. To improve the accuracy of the merger operation, variance and probability are used as energy. No matter how many the thresholds are, the time complexity of the algorithm is stable at . Finally, the experiment is conducted on many MR brain images to verify the performance of the proposed algorithm. Experiment results show that our method can reduce the running time effectively and obtain segmentation results with high accuracy. Siyan Liu, Xuanjing Shen, Yuncong Feng, and Haipeng Chen Copyright © 2017 Siyan Liu et al. All rights reserved. Image Analysis for MRI Based Brain Tumor Detection and Feature Extraction Using Biologically Inspired BWT and SVM Mon, 06 Mar 2017 06:35:32 +0000 http://www.hindawi.com/journals/ijbi/2017/9749108/ The segmentation, detection, and extraction of infected tumor area from magnetic resonance (MR) images are a primary concern but a tedious and time taking task performed by radiologists or clinical experts, and their accuracy depends on their experience only. So, the use of computer aided technology becomes very necessary to overcome these limitations. In this study, to improve the performance and reduce the complexity involves in the medical image segmentation process, we have investigated Berkeley wavelet transformation (BWT) based brain tumor segmentation. Furthermore, to improve the accuracy and quality rate of the support vector machine (SVM) based classifier, relevant features are extracted from each segmented tissue. The experimental results of proposed technique have been evaluated and validated for performance and quality analysis on magnetic resonance brain images, based on accuracy, sensitivity, specificity, and dice similarity index coefficient. The experimental results achieved 96.51% accuracy, 94.2% specificity, and 97.72% sensitivity, demonstrating the effectiveness of the proposed technique for identifying normal and abnormal tissues from brain MR images. The experimental results also obtained an average of 0.82 dice similarity index coefficient, which indicates better overlap between the automated (machines) extracted tumor region with manually extracted tumor region by radiologists. The simulation results prove the significance in terms of quality parameters and accuracy in comparison to state-of-the-art techniques. Nilesh Bhaskarrao Bahadure, Arun Kumar Ray, and Har Pal Thethi Copyright © 2017 Nilesh Bhaskarrao Bahadure et al. All rights reserved. Medical Image Fusion Based on Feature Extraction and Sparse Representation Tue, 21 Feb 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/3020461/ As a novel multiscale geometric analysis tool, sparse representation has shown many advantages over the conventional image representation methods. However, the standard sparse representation does not take intrinsic structure and its time complexity into consideration. In this paper, a new fusion mechanism for multimodal medical images based on sparse representation and decision map is proposed to deal with these problems simultaneously. Three decision maps are designed including structure information map (SM) and energy information map (EM) as well as structure and energy map (SEM) to make the results reserve more energy and edge information. SM contains the local structure feature captured by the Laplacian of a Gaussian (LOG) and EM contains the energy and energy distribution feature detected by the mean square deviation. The decision map is added to the normal sparse representation based method to improve the speed of the algorithm. Proposed approach also improves the quality of the fused results by enhancing the contrast and reserving more structure and energy information from the source images. The experiment results of 36 groups of CT/MR, MR-T1/MR-T2, and CT/PET images demonstrate that the method based on SR and SEM outperforms five state-of-the-art methods. Yin Fei, Gao Wei, and Song Zongxi Copyright © 2017 Yin Fei et al. All rights reserved. Future of the Renal Biopsy: Time to Change the Conventional Modality Using Nanotechnology Sun, 19 Feb 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/6141734/ At the present time, imaging guided renal biopsy is used to provide diagnoses in most types of primary and secondary renal diseases. It has been claimed that renal biopsy can provide a link between diagnosis of renal disease and its pathological conditions. However, sometimes there is a considerable mismatch between patient renal outcome and pathological findings in renal biopsy. This is the time to address some new diagnostic methods to resolve the insufficiency of conventional percutaneous guided renal biopsy. Nanotechnology is still in its infancy in renal imaging; however, it seems that it is the next step in renal biopsy, providing solutions to the limitations of conventional modalities. Hamid Tayebi Khosroshahi, Behzad Abedi, Sabalan Daneshvar, Yashar Sarbaz, and Abolhassan Shakeri Bavil Copyright © 2017 Hamid Tayebi Khosroshahi et al. All rights reserved. Sparse Codebook Model of Local Structures for Retrieval of Focal Liver Lesions Using Multiphase Medical Images Mon, 13 Feb 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/1413297/ Characterization and individual trait analysis of the focal liver lesions (FLL) is a challenging task in medical image processing and clinical site. The character analysis of a unconfirmed FLL case would be expected to benefit greatly from the accumulated FLL cases with experts’ analysis, which can be achieved by content-based medical image retrieval (CBMIR). CBMIR mainly includes discriminated feature extraction and similarity calculation procedures. Bag-of-Visual-Words (BoVW) (codebook-based model) has been proven to be effective for different classification and retrieval tasks. This study investigates an improved codebook model for the fined-grained medical image representation with the following three advantages: (1) instead of SIFT, we exploit the local patch (structure) as the local descriptor, which can retain all detailed information and is more suitable for the fine-grained medical image applications; (2) in order to more accurately approximate any local descriptor in coding procedure, the sparse coding method, instead of -means algorithm, is employed for codebook learning and coded vector calculation; (3) we evaluate retrieval performance of focal liver lesions (FLL) using multiphase computed tomography (CT) scans, in which the proposed codebook model is separately learned for each phase. The effectiveness of the proposed method is confirmed by our experiments on FLL retrieval. Jian Wang, Xian-Hua Han, Yingying Xu, Lanfen Lin, Hongjie Hu, Chongwu Jin, and Yen-Wei Chen Copyright © 2017 Jian Wang et al. All rights reserved. Image Retrieval Method for Multiscale Objects from Optical Colonoscopy Images Wed, 01 Feb 2017 00:00:00 +0000 http://www.hindawi.com/journals/ijbi/2017/7089213/ Optical colonoscopy is the most common approach to diagnosing bowel diseases through direct colon and rectum inspections. Periodic optical colonoscopy examinations are particularly important for detecting cancers at early stages while still treatable. However, diagnostic accuracy is highly dependent on both the experience and knowledge of the medical doctor. Moreover, it is extremely difficult, even for specialist doctors, to detect the early stages of cancer when obscured by inflammations of the colonic mucosa due to intractable inflammatory bowel diseases, such as ulcerative colitis. Thus, to assist the UC diagnosis, it is necessary to develop a new technology that can retrieve similar cases of diagnostic target image from cases in the past that stored the diagnosed images with various symptoms of colonic mucosa. In order to assist diagnoses with optical colonoscopy, this paper proposes a retrieval method for colonoscopy images that can cope with multiscale objects. The proposed method can retrieve similar colonoscopy images despite varying visible sizes of the target objects. Through three experiments conducted with real clinical colonoscopy images, we demonstrate that the method is able to retrieve objects of any visible size and any location at a high level of accuracy. Hirokazu Nosato, Hidenori Sakanashi, Eiichi Takahashi, Masahiro Murakawa, Hiroshi Aoki, Ken Takeuchi, and Yasuo Suzuki Copyright © 2017 Hirokazu Nosato et al. All rights reserved. Recent Advances in Microwave Imaging for Breast Cancer Detection Wed, 21 Dec 2016 06:34:16 +0000 http://www.hindawi.com/journals/ijbi/2016/5054912/ Breast cancer is a disease that occurs most often in female cancer patients. Early detection can significantly reduce the mortality rate. Microwave breast imaging, which is noninvasive and harmless to human, offers a promising alternative method to mammography. This paper presents a review of recent advances in microwave imaging for breast cancer detection. We conclude by introducing new research on a microwave imaging system with time-domain measurement that achieves short measurement time and low system cost. In the time-domain measurement system, scan time would take less than 1 sec, and it does not require very expensive equipment such as VNA. Sollip Kwon and Seungjun Lee Copyright © 2016 Sollip Kwon and Seungjun Lee. All rights reserved. Incorporating Colour Information for Computer-Aided Diagnosis of Melanoma from Dermoscopy Images: A Retrospective Survey and Critical Analysis Mon, 19 Dec 2016 14:00:11 +0000 http://www.hindawi.com/journals/ijbi/2016/4868305/ Cutaneous melanoma is the most life-threatening form of skin cancer. Although advanced melanoma is often considered as incurable, if detected and excised early, the prognosis is promising. Today, clinicians use computer vision in an increasing number of applications to aid early detection of melanoma through dermatological image analysis (dermoscopy images, in particular). Colour assessment is essential for the clinical diagnosis of skin cancers. Due to this diagnostic importance, many studies have either focused on or employed colour features as a constituent part of their skin lesion analysis systems. These studies range from using low-level colour features, such as simple statistical measures of colours occurring in the lesion, to availing themselves of high-level semantic features such as the presence of blue-white veil, globules, or colour variegation in the lesion. This paper provides a retrospective survey and critical analysis of contributions in this research direction. Ali Madooei and Mark S. Drew Copyright © 2016 Ali Madooei and Mark S. Drew. All rights reserved. The Capabilities and Limitations of Clinical Magnetic Resonance Imaging for Detecting Kidney Stones: A Retrospective Study Thu, 17 Nov 2016 10:40:15 +0000 http://www.hindawi.com/journals/ijbi/2016/4935656/ The purpose of this work was to investigate the performance of currently available magnetic resonance imaging (MRI) for detecting kidney stones, compared to computed tomography (CT) results, and to determine the characteristics of successfully detected stones. Patients who had undergone both abdominal/pelvic CT and MRI exams within 30 days were studied. The images were reviewed by two expert radiologists blinded to the patients’ respective radiological diagnoses. The study consisted of four steps: (1) reviewing the MRI images and determining whether any kidney stone(s) are identified; (2) reviewing the corresponding CT images and confirming whether kidney stones are identified; (3) reviewing the MRI images a second time, armed with the information from the corresponding CT, noting whether any kidney stones are positively identified that were previously missed; (4) for all stones MRI-confirmed on previous steps, the radiologist experts being asked to answer whether in retrospect, with knowledge of size and location on corresponding CT, these stones would be affirmed as confidently identified on MRI or not. In this best-case scenario involving knowledge of stones and their locations on concurrent CT, radiologist experts detected 19% of kidney stones on MRI, with stone size being a major factor for stone identification. El-Sayed H. Ibrahim, Joseph G. Cernigliaro, Mellena D. Bridges, Robert A. Pooley, and William E. Haley Copyright © 2016 El-Sayed H. Ibrahim et al. All rights reserved. An Analytical Approach for Fast Recovery of the LSI Properties in Magnetic Particle Imaging Wed, 26 Oct 2016 12:17:21 +0000 http://www.hindawi.com/journals/ijbi/2016/6120713/ Linearity and shift invariance (LSI) characteristics of magnetic particle imaging (MPI) are important properties for quantitative medical diagnosis applications. The MPI image equations have been theoretically shown to exhibit LSI; however, in practice, the necessary filtering action removes the first harmonic information, which destroys the LSI characteristics. This lost information can be constant in the -space reconstruction method. Available recovery algorithms, which are based on signal matching of multiple partial field of views (pFOVs), require much processing time and a priori information at the start of imaging. In this paper, a fast analytical recovery algorithm is proposed to restore the LSI properties of the -space MPI images, representable as an image of discrete concentrations of magnetic material. The method utilizes the one-dimensional (1D) -space imaging kernel and properties of the image and lost image equations. The approach does not require overlapping of pFOVs, and its complexity depends only on a small-sized system of linear equations; therefore, it can reduce the processing time. Moreover, the algorithm only needs a priori information which can be obtained at one imaging process. Considering different particle distributions, several simulations are conducted, and results of 1D and 2D imaging demonstrate the effectiveness of the proposed approach. Hamed Jabbari Asl and Jungwon Yoon Copyright © 2016 Hamed Jabbari Asl and Jungwon Yoon. All rights reserved. Anatomy-Correlated Breast Imaging and Visual Grading Analysis Using Quantitative Transmission Ultrasound™ Mon, 26 Sep 2016 11:36:06 +0000 http://www.hindawi.com/journals/ijbi/2016/7570406/ Objectives. This study presents correlations between cross-sectional anatomy of human female breasts and Quantitative Transmission (QT) Ultrasound, does discriminate classifier analysis to validate the speed of sound correlations, and does a visual grading analysis comparing QT Ultrasound with mammography. Materials and Methods. Human cadaver breasts were imaged using QT Ultrasound, sectioned, and photographed. Biopsies confirmed microanatomy and areas were correlated with QT Ultrasound images. Measurements were taken in live subjects from QT Ultrasound images and values of speed of sound for each identified anatomical structure were plotted. Finally, a visual grading analysis was performed on images to determine whether radiologists’ confidence in identifying breast structures with mammography (XRM) is comparable to QT Ultrasound. Results. QT Ultrasound identified all major anatomical features of the breast, and speed of sound calculations showed specific values for different breast tissues. Using linear discriminant analysis overall accuracy is 91.4%. Using visual grading analysis readers scored the image quality on QT Ultrasound as better than on XRM in 69%–90% of breasts for specific tissues. Conclusions. QT Ultrasound provides accurate anatomic information and high tissue specificity using speed of sound information. Quantitative Transmission Ultrasound can distinguish different types of breast tissue with high resolution and accuracy. John C. Klock, Elaine Iuanow, Bilal Malik, Nancy A. Obuchowski, James Wiskin, and Mark Lenox Copyright © 2016 John C. Klock et al. All rights reserved. Retinal Fundus Image Enhancement Using the Normalized Convolution and Noise Removing Sun, 04 Sep 2016 11:15:36 +0000 http://www.hindawi.com/journals/ijbi/2016/5075612/ Retinal fundus image plays an important role in the diagnosis of retinal related diseases. The detailed information of the retinal fundus image such as small vessels, microaneurysms, and exudates may be in low contrast, and retinal image enhancement usually gives help to analyze diseases related to retinal fundus image. Current image enhancement methods may lead to artificial boundaries, abrupt changes in color levels, and the loss of image detail. In order to avoid these side effects, a new retinal fundus image enhancement method is proposed. First, the original retinal fundus image was processed by the normalized convolution algorithm with a domain transform to obtain an image with the basic information of the background. Then, the image with the basic information of the background was fused with the original retinal fundus image to obtain an enhanced fundus image. Lastly, the fused image was denoised by a two-stage denoising method including the fourth order PDEs and the relaxed median filter. The retinal image databases, including the DRIVE database, the STARE database, and the DIARETDB1 database, were used to evaluate image enhancement effects. The results show that the method can enhance the retinal fundus image prominently. And, different from some other fundus image enhancement methods, the proposed method can directly enhance color images. Peishan Dai, Hanwei Sheng, Jianmei Zhang, Ling Li, Jing Wu, and Min Fan Copyright © 2016 Peishan Dai et al. All rights reserved. Automated Fovea Detection in Spectral Domain Optical Coherence Tomography Scans of Exudative Macular Disease Wed, 31 Aug 2016 14:33:31 +0000 http://www.hindawi.com/journals/ijbi/2016/7468953/ In macular spectral domain optical coherence tomography (SD-OCT) volumes, detection of the foveal center is required for accurate and reproducible follow-up studies, structure function correlation, and measurement grid positioning. However, disease can cause severe obscuring or deformation of the fovea, thus presenting a major challenge in automated detection. We propose a fully automated fovea detection algorithm to extract the fovea position in SD-OCT volumes of eyes with exudative maculopathy. The fovea is classified into 3 main appearances to both specify the detection algorithm used and reduce computational complexity. Based on foveal type classification, the fovea position is computed based on retinal nerve fiber layer thickness. Mean absolute distance between system and clinical expert annotated fovea positions from a dataset comprised of 240 SD-OCT volumes was 162.3 µm in cystoid macular edema and 262 µm in nAMD. The presented method has cross-vendor functionality, while demonstrating accurate and reliable performance close to typical expert interobserver agreement. The automatically detected fovea positions may be used as landmarks for intra- and cross-patient registration and to create a joint reference frame for extraction of spatiotemporal features in “big data.” Furthermore, reliable analyses of retinal thickness, as well as retinal structure function correlation, may be facilitated. Jing Wu, Sebastian M. Waldstein, Alessio Montuoro, Bianca S. Gerendas, Georg Langs, and Ursula Schmidt-Erfurth Copyright © 2016 Jing Wu et al. All rights reserved. Kinect-Based Correction of Overexposure Artifacts in Knee Imaging with C-Arm CT Systems Tue, 19 Jul 2016 12:10:04 +0000 http://www.hindawi.com/journals/ijbi/2016/2502486/ Objective. To demonstrate a novel approach of compensating overexposure artifacts in CT scans of the knees without attaching any supporting appliances to the patient. C-Arm CT systems offer the opportunity to perform weight-bearing knee scans on standing patients to diagnose diseases like osteoarthritis. However, one serious issue is overexposure of the detector in regions close to the patella, which can not be tackled with common techniques. Methods. A Kinect camera is used to algorithmically remove overexposure artifacts close to the knee surface. Overexposed near-surface knee regions are corrected by extrapolating the absorption values from more reliable projection data. To achieve this, we develop a cross-calibration procedure to transform surface points from the Kinect to CT voxel coordinates. Results. Artifacts at both knee phantoms are reduced significantly in the reconstructed data and a major part of the truncated regions is restored. Conclusion. The results emphasize the feasibility of the proposed approach. The accuracy of the cross-calibration procedure can be increased to further improve correction results. Significance. The correction method can be extended to a multi-Kinect setup for use in real-world scenarios. Using depth cameras does not require prior scans and offers the possibility of a temporally synchronized correction of overexposure artifacts. To achieve this, we develop a cross-calibration procedure to transform surface points from the Kinect to CT voxel coordinates. Johannes Rausch, Andreas Maier, Rebecca Fahrig, Jang-Hwan Choi, Waldo Hinshaw, Frank Schebesch, Sven Haase, Jakob Wasza, Joachim Hornegger, and Christian Riess Copyright © 2016 Johannes Rausch et al. All rights reserved. Fluorescence-Guided Resection of Malignant Glioma with 5-ALA Mon, 27 Jun 2016 09:46:42 +0000 http://www.hindawi.com/journals/ijbi/2016/6135293/ Malignant gliomas are extremely difficult to treat with no specific curative treatment. On the other hand, photodynamic medicine represents a promising technique for neurosurgeons in the treatment of malignant glioma. The resection rate of malignant glioma has increased from 40% to 80% owing to 5-aminolevulinic acid-photodynamic diagnosis (ALA-PDD). Furthermore, ALA is very useful because it has no serious complications. Based on previous research, it is apparent that protoporphyrin IX (PpIX) accumulates abundantly in malignant glioma tissues after ALA administration. Moreover, it is evident that the mechanism underlying PpIX accumulation in malignant glioma tissues involves an abnormality in porphyrin-heme metabolism, specifically decreased ferrochelatase enzyme activity. During resection surgery, the macroscopic fluorescence of PpIX to the naked eye is more sensitive than magnetic resonance imaging, and the alert real time spectrum of PpIX is the most sensitive method. In the future, chemotherapy with new anticancer agents, immunotherapy, and new methods of radiotherapy and gene therapy will be developed; however, ALA will play a key role in malignant glioma treatment before the development of these new treatments. In this paper, we provide an overview and present the results of our clinical research on ALA-PDD. Sadahiro Kaneko and Sadao Kaneko Copyright © 2016 Sadahiro Kaneko and Sadao Kaneko. All rights reserved. Application of Artificial Neural Network Models in Segmentation and Classification of Nodules in Breast Ultrasound Digital Images Thu, 16 Jun 2016 09:37:22 +0000 http://www.hindawi.com/journals/ijbi/2016/7987212/ This research presents a methodology for the automatic detection and characterization of breast sonographic findings. We performed the tests in ultrasound images obtained from breast phantoms made of tissue mimicking material. When the results were considerable, we applied the same techniques to clinical examinations. The process was started employing preprocessing (Wiener filter, equalization, and median filter) to minimize noise. Then, five segmentation techniques were investigated to determine the most concise representation of the lesion contour, enabling us to consider the neural network SOM as the most relevant. After the delimitation of the object, the most expressive features were defined to the morphological description of the finding, generating the input data to the neural Multilayer Perceptron (MLP) classifier. The accuracy achieved during training with simulated images was 94.2%, producing an AUC of 0.92. To evaluating the data generalization, the classification was performed with a group of unknown images to the system, both to simulators and to clinical trials, resulting in an accuracy of 90% and 81%, respectively. The proposed classifier proved to be an important tool for the diagnosis in breast ultrasound. Karem D. Marcomini, Antonio A. O. Carneiro, and Homero Schiabel Copyright © 2016 Karem D. Marcomini et al. All rights reserved. Blind Source Parameters for Performance Evaluation of Despeckling Filters Thu, 19 May 2016 12:58:31 +0000 http://www.hindawi.com/journals/ijbi/2016/3636017/ The speckle noise is inherent to transthoracic echocardiographic images. A standard noise-free reference echocardiographic image does not exist. The evaluation of filters based on the traditional parameters such as peak signal-to-noise ratio, mean square error, and structural similarity index may not reflect the true filter performance on echocardiographic images. Therefore, the performance of despeckling can be evaluated using blind assessment metrics like the speckle suppression index, speckle suppression and mean preservation index (SMPI), and beta metric. The need for noise-free reference image is overcome using these three parameters. This paper presents a comprehensive analysis and evaluation of eleven types of despeckling filters for echocardiographic images in terms of blind and traditional performance parameters along with clinical validation. The noise is effectively suppressed using the logarithmic neighborhood shrinkage (NeighShrink) embedded with Stein’s unbiased risk estimation (SURE). The SMPI is three times more effective compared to the wavelet based generalized likelihood estimation approach. The quantitative evaluation and clinical validation reveal that the filters such as the nonlocal mean, posterior sampling based Bayesian estimation, hybrid median, and probabilistic patch based filters are acceptable whereas median, anisotropic diffusion, fuzzy, and Ripplet nonlinear approximation filters have limited applications for echocardiographic images. Nagashettappa Biradar, M. L. Dewal, ManojKumar Rohit, Sanjaykumar Gowre, and Yogesh Gundge Copyright © 2016 Nagashettappa Biradar et al. All rights reserved. Obtaining Thickness Maps of Corneal Layers Using the Optimal Algorithm for Intracorneal Layer Segmentation Mon, 09 May 2016 12:58:39 +0000 http://www.hindawi.com/journals/ijbi/2016/1420230/ Optical Coherence Tomography (OCT) is one of the most informative methodologies in ophthalmology and provides cross sectional images from anterior and posterior segments of the eye. Corneal diseases can be diagnosed by these images and corneal thickness maps can also assist in the treatment and diagnosis. The need for automatic segmentation of cross sectional images is inevitable since manual segmentation is time consuming and imprecise. In this paper, segmentation methods such as Gaussian Mixture Model (GMM), Graph Cut, and Level Set are used for automatic segmentation of three clinically important corneal layer boundaries on OCT images. Using the segmentation of the boundaries in three-dimensional corneal data, we obtained thickness maps of the layers which are created by these borders. Mean and standard deviation of the thickness values for normal subjects in epithelial, stromal, and whole cornea are calculated in central, superior, inferior, nasal, and temporal zones (centered on the center of pupil). To evaluate our approach, the automatic boundary results are compared with the boundaries segmented manually by two corneal specialists. The quantitative results show that GMM method segments the desired boundaries with the best accuracy. Hossein Rabbani, Rahele Kafieh, Mahdi Kazemian Jahromi, Sahar Jorjandi, Alireza Mehri Dehnavi, Fedra Hajizadeh, and Alireza Peyman Copyright © 2016 Hossein Rabbani et al. All rights reserved. Comparison of Texture Features Used for Classification of Life Stages of Malaria Parasite Mon, 09 May 2016 12:09:01 +0000 http://www.hindawi.com/journals/ijbi/2016/7214156/ Malaria is a vector borne disease widely occurring at equatorial region. Even after decades of campaigning of malaria control, still today it is high mortality causing disease due to improper and late diagnosis. To prevent number of people getting affected by malaria, the diagnosis should be in early stage and accurate. This paper presents an automatic method for diagnosis of malaria parasite in the blood images. Image processing techniques are used for diagnosis of malaria parasite and to detect their stages. The diagnosis of parasite stages is done using features like statistical features and textural features of malaria parasite in blood images. This paper gives a comparison of the textural based features individually used and used in group together. The comparison is made by considering the accuracy, sensitivity, and specificity of the features for the same images in database. Vinayak K. Bairagi and Kshipra C. Charpe Copyright © 2016 Vinayak K. Bairagi and Kshipra C. Charpe. All rights reserved. Appropriate Contrast Enhancement Measures for Brain and Breast Cancer Images Thu, 31 Mar 2016 17:45:45 +0000 http://www.hindawi.com/journals/ijbi/2016/4710842/ Medical imaging systems often produce images that require enhancement, such as improving the image contrast as they are poor in contrast. Therefore, they must be enhanced before they are examined by medical professionals. This is necessary for proper diagnosis and subsequent treatment. We do have various enhancement algorithms which enhance the medical images to different extents. We also have various quantitative metrics or measures which evaluate the quality of an image. This paper suggests the most appropriate measures for two of the medical images, namely, brain cancer images and breast cancer images. Suneet Gupta and Rabins Porwal Copyright © 2016 Suneet Gupta and Rabins Porwal. All rights reserved.