Table of Contents
International Journal of Evolutionary Biology
Volume 2014, Article ID 951035, 14 pages
Research Article

Network Analysis of Plasmidomes: The Azospirillum brasilense Sp245 Case

1Institute of Protein Biochemistry, National Research Council, Via P. Castellino 111, 80134 Naples, Italy
2Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Firenze, Italy
3Tree and Timber Institute, National Research Council, Via Madonna del Piano 10, 50019 Fiorentino, Firenze, Italy

Received 31 July 2014; Revised 10 November 2014; Accepted 11 November 2014; Published 29 December 2014

Academic Editor: Andres Moya

Copyright © 2014 Valerio Orlandini et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

Supplementary File 1: Pipeline followed to find the connected proteins coded by the Azospirillum brasilense plasmidome and to characterize their function.

Supplementary File 2: Predicted function, Preferential Organismal Sharing (POS), and identity percent of the first BLAST match for each connected protein of the Azospirillum brasilense plasmidome.

Supplementary File 3: Plasmids – Chromosome connections at different identity thresholds, from 40% to 100%.

Supplementary File 4: List of all proteins coded by the Azospirillum brasilense plasmidome, with their functional characterization according to the COG (Cluster of Orthologous Groups) database.

  1. Supplementary Material 1
  2. Supplementary Material 2
  3. Supplementary Material 3
  4. Supplementary Material 4