Table of Contents Author Guidelines Submit a Manuscript
Comparative and Functional Genomics
Volume 2007, Article ID 58721, 4 pages
http://dx.doi.org/10.1155/2007/58721
Research Article

Protein Coevolution and Isoexpression in Yeast Macromolecular Complexes

1CNRS UMR 7637, Ecole Supérieure de Physique et de Chimie Industrielles, 10 rue Vauquelin, Paris 75005, France
2European Molecular Biology Laboratory Heidelberg, Meyerhofstraße 1, Heidelberg 69117, Germany
3Institut Cochin, Paris 75014, France
4INSERM U567, Paris 75014, France
5CNRS UMR 8104, Paris 75014, France
6Faculté de Médecine René Descartes, Université Paris 5, UM 3, Paris 75014, France
7UFR de Biologie et Sciences de la Nature, Université Paris 7, Paris 75005, France

Received 4 September 2006; Revised 20 November 2006; Accepted 23 November 2006

Academic Editor: Pierre Legrain

Copyright © 2007 Laurence Ettwiller and Reiner A. Veitia. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. A. E. Hirsh and H. B. Fraser, “Protein dispensability and rate of evolution,” Nature, vol. 411, no. 6841, pp. 1046–1049, 2001. View at Publisher · View at Google Scholar
  2. C. Pál, B. Papp, and L. D. Hurst, “Genomic function: rate of evolution and gene dispensability,” Nature, vol. 421, no. 6922, pp. 496–497, 2003. View at Google Scholar
  3. H. B. Fraser, A. E. Hirsh, L. M. Steinmetz, C. Scharfe, and M. W. Feldman, “Evolutionary rate in the protein interaction network,” Science, vol. 296, no. 5568, pp. 750–752, 2002. View at Publisher · View at Google Scholar
  4. H. B. Fraser, D. P. Wall, and A. E. Hirsh, “A simple dependence between protein evolution rate and the number of protein-protein interactions,” BMC Evolutionary Biology, vol. 3, no. 1, p. 11, 2003. View at Publisher · View at Google Scholar
  5. J. D. Bloom and C. Adami, “Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets,” BMC Evolutionary Biology, vol. 3, no. 1, p. 21, 2003. View at Publisher · View at Google Scholar
  6. C. Pál, B. Papp, and L. D. Hurst, “Highly expressed genes in yeast evolve slowly,” Genetics, vol. 158, no. 2, pp. 927–931, 2001. View at Google Scholar
  7. R. Jansen, D. Greenbaum, and M. Gerstein, “Relating whole-genome expression data with protein-protein interactions,” Genome Research, vol. 12, no. 1, pp. 37–46, 2002. View at Publisher · View at Google Scholar
  8. R. A. Veitia, “Exploring the etiology of haploinsufficiency,” BioEssays, vol. 24, no. 2, pp. 175–184, 2002. View at Publisher · View at Google Scholar
  9. B. Papp, C. Pál, and L. D. Hurst, “Dosage sensitivity and the evolution of gene families in yeast,” Nature, vol. 424, no. 6945, pp. 194–197, 2003. View at Publisher · View at Google Scholar
  10. F. C. P. Holstege, E. G. Jennings, J. J. Wyrick et al., “Dissecting the regulatory circuitry of a eukaryotic genome,” Cell, vol. 95, no. 5, pp. 717–728, 1998. View at Publisher · View at Google Scholar
  11. P. M. Sharp and W. H. Li, “The codon adaptation index—a measure of directional synonymous codon usage bias, and its potential applications,” Nucleic Acids Research, vol. 15, no. 3, pp. 1281–1295, 1987. View at Publisher · View at Google Scholar
  12. O. N. Keene, “The log transformation is special,” Statistics in Medicine, vol. 14, no. 8, pp. 811–819, 1995. View at Publisher · View at Google Scholar
  13. G. Giaever, A. M. Chu, L. Ni et al., “Functional profiling of the Saccharomyces cerevisiae genome,” Nature, vol. 418, no. 6896, pp. 387–391, 2002. View at Publisher · View at Google Scholar
  14. S. Wuchty and E. Almaas, “Peeling the yeast protein network,” Proteomics, vol. 5, no. 2, pp. 444–449, 2005. View at Publisher · View at Google Scholar
  15. N. J. Morey, C. N. Greene, and S. Jinks-Robertson, “Genetic analysis of transcription-associated mutation in Saccharomyces cerevisiae,” Genetics, vol. 154, no. 1, pp. 109–120, 2000. View at Google Scholar
  16. J. Q. Svejstrup, “Mechanisms of transcription-coupled DNA repair,” Nature Reviews Molecular Cell Biology, vol. 3, no. 1, pp. 21–29, 2002. View at Publisher · View at Google Scholar
  17. H. Akashi, “Translational selection and yeast proteome evolution,” Genetics, vol. 164, no. 4, pp. 1291–1303, 2003. View at Google Scholar