Analysis of Array-CGH Data Using the R and Bioconductor Software Suite
Figure 2
Copy number states of chromosome 11. Copy number states of chromosome 11 as assigned by five different breakpoint detection algorithms (GLAD, DNAcopy, Picard, aCGH, BioHMM) are shown for two hepatocellular tumor cases, N90 and N69. FISH analyses on formalin-fixed paraffin-embedded tissue sections are shown in the inset box; orange spots: CCND1 probe, green spots: IGH probe.
