Aberrant Expression of Critical Genes during Secondary Cell Wall Biogenesis in a Cotton Mutant, Ligon Lintless-1 (𝐿𝑖-1)

Table 2

Representation of genes which are significantly upregulated or downregulated by a factor of 2X in 24 dpa 𝐿𝑖-1 cotton fiber relative to wild-type TM-1 fiber. (Genes with unknown function or no sequence homology are omitted.).

GenBank	Description	Regulation	Fold Change	Functional Category
U73588	SuSy Isoform	Up	8.8	Cytoskeleton
AF336286	GhMYB36	Up	6.1	Cytoskeleton
AF336286	GaMYB38	Down	7.7	Cytoskeleton
DQ13871	Sucrose transport protein	Down	4.7	Cytoskeleton
AB022091	Sucrose Synthase-2	Down	4.1	Cytoskeleton
AL391142	Gamma Tubulin Component	Down	3.1	Cytoskeleton
AF521250	Alpha Tubulin	Down	2.5	Cytoskeleton
AY054693	Beta Tubulin-9	Down	2.4	Cytoskeleton
EU375992	GhTub Beta tubulin 2	Down	2.1	Cytoskeleton
NP177112	EXPA1	Up	6.2	Cell Structure/Organization
DQ02352	Expansin-related gene	Down	5.3	Cell Structure/Organization
AF043284	Expansin	Down	4.1	Cell Structure/Organization
AC152751	Putative Kinesin Light Chain	Down	3.7	Cell Structure/Organization
NM_00106	CesA7	Down	2.5	Cell Structure/Organization
AY088211	Anthocyanidin transferase	Up	5.7	Stress Response
AF336284	Anthocyanin Regulatory Protein	Up	5.6	Stress Response
AY27540	Flavonoid	Up	4.8	Stress Response
AY78110	Ethylene Transcription Factor	Down	5.9	Signaling
NM1024	Calmodulin-related protein	Down	2.7	Signaling