mRNA/microRNA Profile at the Metamorphic Stage of Olive Flounder (Paralichthys olivaceus)

Table 5

Sequence and characteristics of conserved miRNAs in P. olivaceus.

miRNA family	miRNA name	No. of clones	Sequence (5′-3′)	Length (bp)	Conserved in other animals
pol-miR-1	pol-miR-1a	1	UGGAAUGUAAAGAAGUAUGUA	21	ssc, cfa, mmu-miR-1-2-as, mdo, xtr, ppa, gga, cbr, cel
pol-let-7	pol-let-7a	3	UGAGGUAGUAGGUUGUAUAGUU	22	eca, bfl-let-7-1-as, sko, lgi, bfl, ptr, cfa, mml, mdo, bta, xtr, tni, fru, dre, gga, rno, mmu, cbr, hsa, cel
	pol-let-7e	2	UGAGGUAGUAGAUUGAAUAGUU	22	oan, tni, fru, dre, gga
	pol-miR-7f	1	UGAGGUAGUAGAUUGUAUAGUU	22	eca, ptr, cfa, mml, oan, mdo, xtr, bta, ssc, dre, gga, rno, mmu,
	pol-let-7j	1	UGAGGUAGUUGUUUGUACAGUU	22	dre
pol-miR-9*	pol-miR-9*	3	UAAAGCUAGAUAACCGAAAGU	21	mdo, xtr, dre
pol-miR-10	pol-miR-10b	1	UACCCUGUAGAACCGAAUUUGU	22	oan, xtr, ppa, mne, ggo, gga, omy
pol-miR-21	pol-miR-21a	1	UAGCUUAUCAGACUGGUGUUGG	22	omy
pol-miR-23	pol-miR-23a	3	AUCACAUUGCCAGGGAUUUCCA	22	oan, bta, tni, fru, dre
pol-miR-26	pol-miR-26a	1	UUCAAGUAAUCCAGGAUAGGCU	22	eca, cfa, bta, oan, tni, fru, ppa, mml, mne, lla, ppy, ggo, ptr, ssc, dre, rno, mmu, hsa, omy
pol-miR-125	pol-miR-125b	1	UCCCUGAGACCCUAACUUGUGA	22	eca, bfl, spu, sko, cap, bfl, dya, dwi, dvi, dsi, dse, dpe, dmo, dgr, der, dan, tca, cfa, oan, mdo, xtr,; bta, tni, fru, lca, mne, lla, sla, mml, ptr, ppy, ppa, age, ggo, ssc, dre, aga, dps, gga, rno, hsa, dme,; mmu
pol-miR-128	pol-miR-128	2	UCACAGUGAACCGGUCUCUUU	21	eca, cfa, mml, oan, mdo, bta, ptr, gga, rno, hsa, ppa, mmu, omy
pol-miR-145	pol-miR-145	1	GUCCAGUUUUCCCAGGAAUCCC	22	dre, omy
pol-miR-181	pol-miR-181a	1	AACAUUCAACGCUGUCGGUGAGU	23	eca, oan, mdo, xtr, tni, fru, lla, ppy, mne, sla, mml, ptr, ppa, ggo, dre, gga, rno, hsa, mmu,; omy
	pol-miR-181f	1	AACAUUCAACGCUGUCGGUGAGUU	24	bta
pol-miR-200	pol-miR-200a	1	UAACACUGUCUGGUAACGAUGU	22	eca, ptr, mml, mdo, xtr, tni, fru, dre, gga, rno, hsa, mmu
pol-miR-221	pol-miR-221	1	AGCUACAUUGUCUGCUGGGUUUC	23	eca, ptr, mdo, xtr, tni, fru, ppa, ppy, ggo, mml, dre, gga, rno, mmu, hsa
pol-miR-429	pol-miR-429	3	UAAUACUGUCUGGUAAUGCCGU	22	bta, oan, xtr, gga, tni, fru, dre, cfa, rno, mmu
pol-miR-724	pol-miR-724	1	UUAAAGGGAAUUUGCGACUGUU	22	dre