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| Gene_ID | Protein abundance-Predicted-CT120 | RNA abundance-Measured-CT120 | Protein abundance-Measured-CT120 | Protein abundance-Predicted-ST120 | RNA abundance-Measured-ST120 | Protein abundance-Measured-ST120 | Description |
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| Amino acid biosynthesis | | | | | | |
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| DVU0285 | 5.00 | 3005.10 | x | 7.43 | 4051.50 | x | Imidazole glycerol phosphate synthase (hisH) |
| DVU1665 | 21.82 | 20264.00 | x | 50.55 | 30766.00 | x | 3-dehydroquinate dehydratase, type II (aroQ) |
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| Biosynthesis of cofactors, prosthetic groups, and carriers | | | | | |
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| DVU0157 | 5.45 | 7559.00 | x | 6.31 | 5092.30 | x | Thiamin-monophosphate kinase (thiL) |
| DVU0931 | 5.41 | 1730.40 | x | 6.87 | 4401.40 | x | Phosphomethylpyrimidine kinase (thiD) |
| DVU1200 | 5.82 | 5439.20 | x | 6.75 | 5079.60 | x | Riboflavin synthase, alpha subunit (ribE) |
| DVU2749 | 2.85 | 1427.30 | x | 3.59 | 856.35 | x | Precorrin-6Y C5,15-methyltransferase (decarboxylating) (cobL) |
| DVU3307 | 14.65 | 20224.00 | x | 26.42 | 30616.00 | x | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (ubiX) |
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| Cell envelope | | | | | | | |
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| DVU0294 | 2.44 | 1034.50 | x | 3.15 | 726.82 | x | Glycosyl transferase, group 2 family protein |
| DVU0308 | 2.97 | 1552.00 | x | 7.93 | 6986.70 | x | Membrane protein |
| DVU0328 | 8.59 | 5628.30 | x | 9.12 | 5042.40 | x | Glycosyl transferase, group 1 family protein |
| DVU0407 | 26.65 | 20237.00 | x | 38.70 | 32568.00 | x | Rare lipoprotein A family protein |
| DVU1534 | 2.48 | 1792.60 | x | 3.56 | 2183.30 | x | Membrane protein |
| DVU2053 | 2.98 | 2406.60 | x | 3.85 | 2507.60 | x | Membrane protein |
| DVU2102 | 2.91 | 628.30 | x | 3.88 | 843.26 | x | Outer membrane protein, OMP85 family |
| DVU2356 | 20.54 | 6021.30 | x | 36.26 | 7883.90 | x | Membrane protein |
| DVU2672 | 3.30 | 3253.30 | x | 4.47 | 5875.90 | x | Membrane protein |
| DVU2725 | 5.20 | 4925.80 | x | 13.97 | 8894.70 | x | Membrane protein |
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| Cellular processes | | | | | | | |
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| DVU0302 | 28.35 | 22358.00 | x | 37.21 | 21180.00 | x | Chemotaxis protein CheX |
| DVU2069 | 2.18 | 811.21 | x | 3.72 | 658.60 | x | DNA processing protein DprA |
| DVU2816 | 4.82 | 539.18 | x | 8.65 | 1502.80 | x | Multidrug resistance protein |
| DVU2893 | 4.59 | 9413.30 | x | 6.78 | 9241.60 | x | Flagellar basal-body rod protein |
| DVU3326 | 3.13 | 782.67 | x | 3.68 | 2732.60 | x | Multidrug resistance protein, Smr family |
| DVUA0002 | 5.53 | 2257.50 | x | 12.96 | 6384.00 | x | ParA family protein |
| DNA metabolism | | | | | | | |
|
| DVU0878 | 3.20 | 1967.30 | x | 7.13 | 11149.00 | x | dnaK suppressor protein |
| DVU1353 | 2.26 | 1516.00 | x | 10.31 | 868.27 | x | DNA polymerase III, alpha subunit (dnaE) |
| DVU1703 | 1.93 | 906.31 | x | 2.69 | 628.53 | x | Type I restriction-modification enzyme, R subunit |
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| Energy metabolism | | | | | | | |
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| DVU0080 | 4.42 | 2476.60 | x | 6.45 | 5175.70 | x | Fumarate hydratase, class II (fumC) |
| DVU0531 | 6.57 | 328.82 | x | 11.02 | 1157.90 | x | Hmc operon protein 6 |
| DVU2137 | 3.64 | 389.78 | x | 4.45 | 338.82 | x | Succinyl-CoA synthase, beta/alpha subunits (sucCD) |
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| Other categories | | | | | | | |
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| DVU0197 | 3.46 | 933.13 | x | 4.40 | 285.54 | x | Phage portal protein, lambda family |
| DVU1490 | 4.72 | 351.64 | x | 5.70 | 372.18 | x | Tail tape measure protein |
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| Regulatory functions | | | | | | |
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| DVU0063 | 3.74 | 3823.20 | x | 4.79 | 6404.70 | x | Transcriptional regulator, MarR family |
| DVU1331 | 7.54 | 6812.50 | x | 8.33 | 11619.00 | x | Transcriptional regulator, LysR family |
| DVU1645 | 7.22 | 7075.60 | x | 14.03 | 23482.00 | x | Transcriptional regulator, ArsR family |
| DVU3062 | 2.34 | 1205.40 | x | 2.92 | 570.26 | x | Sensor histidine kinase/response regulator |
| DVU3095 | 12.30 | 17923.00 | x | 14.86 | 23528.00 | x | Transcriptional regulator, Fur family |
| DVU0721 | 4.20 | 1085.90 | x | 7.19 | 513.28 | x | Sensory box histidine kinase |
| DVU0834 | 5.73 | 2795.50 | x | 12.17 | 13860.00 | x | Ribonuclease HII (rnhB) |
| DVU1075 | 13.63 | 30772.00 | x | 15.45 | 27576.00 | x | Ribonuclease P protein component (rnpA) |
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| Transport and binding proteins | | | | | | |
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| DVU0593 | 2.58 | 992.23 | x | 3.28 | 1151.30 | x | L-lysine exporter |
| DVU1068 | 3.92 | 301.98 | x | 5.76 | 270.52 | x | Branched-chain amino acid ABC transporter, permease proteins |
| DVU2340 | 6.00 | 11276.00 | x | 7.00 | 11625.00 | x | Amino acid ABC transporter, permease protein |
| DVU2572 | 3.19 | 2831.50 | x | 5.77 | 7937.50 | x | Ferrous iron transport protein A |
| DVU2574 | 4.62 | 5005.50 | x | 8.85 | 8857.00 | x | Ferrous ion transport protein |
| DVU2744 | 17.96 | 1201.00 | x | 34.42 | 3053.50 | x | High-affinity branched-chain amino acid ABC transporter |
| DVUA0136 | 3.29 | 673.57 | x | 3.89 | 346.83 | x | Zinc transporter (zupT) |
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| Unknown function | | | | | | | |
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| DVU0155 | 8.35 | 16519.00 | x | 12.15 | 18298.00 | x | Type I phosphodiesterase/nucleotide pyrophosphatase family proteins |
| DVU0938 | 10.12 | 15409.00 | x | 11.76 | 13138.00 | x | Isoamylase N-terminal domain protein |
| DVU1023 | 7.26 | 123.66 | x | 8.15 | 144.26 | x | Rhomboid family protein |
| DVU1202 | 5.39 | 3480.30 | x | 5.92 | 5395.40 | x | Cytidine/deoxycytidylate deaminase family protein |
| DVU1558 | 5.77 | 189.07 | x | 6.47 | 234.72 | x | Cysteine-rich domain/iron-sulfur cluster-binding domain proteins |
| DVU1730 | 3.16 | 1288.70 | x | 3.74 | 4503.10 | x | DNA-binding protein |
| DVU1745 | 6.55 | 319.33 | x | 7.58 | 182.38 | x | DNA-binding protein |
| DVU1747 | 5.08 | 258.33 | x | 12.80 | 230.72 | x | ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domainsprotein |
| DVU2036 | 4.27 | 1086.70 | x | 5.07 | 350.61 | x | Helix-turn-helix protein, CopG family |
| DVUA0039 | 3.75 | 269.47 | x | 4.27 | 261.42 | x | Chain length determinant family protein |
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