Evolution and Conservation of Predicted Inclusion Membrane Proteins in Chlamydiae

Table 1

Open reading frames with predicted Inc-like domains^a.

C. trachomatis	C. muridarum	C. caviae	C. felis	C. pneumoniae
—^b	—	CCA00222	CF0784	CP0230
—	TC0328	CCA00221	CF0785	CP0229
—	—	CCA00353	—	CP0314
CT005	TC0273	CCA00290	CF0713	CP0310
CT006	TC0274	CCA00291	CF0711	CP0311
—	—	CCA00318	—	—
CT036	TC0306	CCA00647	—	CP0642
—	—	CCA00645	—	—
—	—	CCA00361	CF0646	CP0322
—	—	—	CF0611	—
—	—	CCA00397	CF0610	—
CT058	TC0328	CCA00426/425/398/221	CF0609	CP0387/388/390/667*
CT079	TC0351	CCA00449	—	CP0424
CT101	—	CCA00470	CF0537	CP0446
CT115^†	TC0391	—	—	—
CT115	—	CCA00622	CF0382^†	—
CT116	TC0392	—	—	—
CT117	TC0393	—	—	—
CT118	TC0394	—	—	—
—	—	CCA00636/633/634/639	CF0574	CP0401^†
—	—	CCA00530	CF0479/369	CP0404/407
—	—	CCA00434	CF0574^†	CP0405/404
CT119^†	TC0396	CCA00550	CF0458	—
—	—	CCA00550	—	CP0581^†
CT134	TC0411	CCA00537	CF0471	CP0520/519
CT135	TC0412^†	CCA00538	—	CP0522*
CT135	TC0412	CCA00538^†	CF0470	CP0521*/522*
CT147	TC0424	CCA00616	CF0388	CP0623
—	—	CCA00621	CF0383	CP0627
—	—	CCA00620	CF0384	—
—	—	CCA00619	CF0385	CP0626
CT164	—	—	—	—
—	—	CCA00557	CF0449/450/451	CP0730^†
—	—	CCA00557^†	CF0449/450/451	—
		CCA00576	CF0425	CP0595
CT179	TC0451	CCA00591	CF0412	CP0534
CT192	TC0464	—	—	—
CT195	TC0468	CCA00494	CF0513	CP0470
—	—	CCA00514	CF0493	CP0493/495
CT196	TC0469	—	—	—
CT214	TC0486	CCA00500	CF0508	—
—	—	—	CF0504	—
—	—	CCA00513	—	CP0707^†
—	—	CCA00513^†	CF0494^†	CP0730
CT222	—	—	—	—
CT223	TC0495	—	—	CP0709
CT224	—	—	—	—
CT225	—	—	—	—
—	TC0496	—	—	CP0390
CT226	TC0497	—	—	—
CT227	TC0498	—	—	—
CT228	TC0499^†	CCA00513	—	—
CT229	TC0500	—	—	—
CT232	TC0503	CCA00491	CF0516	CP0467
CT233	TC0504	CCA00490	CF0517	CP0466
CT244*	TC0515	—	CF0528*	CP0455*
CT249	TC0520	—	—	—
—	—	CCA00474	CF0533	—
—	—	CCA00497	—	CP0473
—	—	CCA00586*	CF0422*	CP0481
—	—	CCA00513	—	CP0539
—	—	CCA00582*	CF0418	CP0581
—	—	CCA00576	CF0425	CP0595
—	—	CCA00430	—	—
—	—	CCA00424	CF0583	CP0649
—	—	CCA00398	CF0609	CP0387
—	—	CCA00397	CF0610	—
—	—	CCA00352	—	CP0313
CT288	TC0561	CCA00351	CF0654	CP0709^†
—	TC0573	—	—	—
CT300	TC0574	—	—	—
CT324	TC0598	CCA00700	CF0311	CP0703
CT345	TC0624	—	—	—
CT357	TC0636	—	—	—
CT358	TC0637	—	CF0218	—
—	—	CCA00361	CF0646	CP0322
—	—	CCA00360	CF0647	CP0321
—	—	CCA00334/00339	CF667/668/669	—
—	—	CCA00325	CF0677/678	CP0742
—	—	CCA00318	CF0685	—
CT365	TC0644	CCA00269	CF0739	CP0280
CT383	TC0662	CCA00263	CF0745	CP0274
—	—	CCA00156	CF0851	CP0825/163
CT440	TC0724	CCA00188	CF0818	CP0198
CT442	TC0726	CCA00186	—	CP0196
CT449	TC0734	CCA00177	CF0830^b	CP0185
CT449^†	TC0734	—	—	CP0185
CT483	TC0770	CCA00139	CF0867	CP0146
CT484	TC0771	CCA00138	CF0868	CP0145
—	—	CCA00156	CF0851	CP0163
—	—	—	CF0048	—
CT565	TC0854	CCA00941	CF0073	CP1049
CT616*	TC0906*	CCA01002	CF0010	CP1117
CT618	TC0908	CCA01004	CF0008	CP1119
CT642	TC0010	CCA00987	CF0026	CP1102
—	TC0011	—	—	—
CT728	TC0101	CCA00898	CF0116	CP1000
—	—	—	CF0128	—
CT788	TC0171	CCA00832	CF0182	CP0923
CT789	—	—	—	—
CT813	TC0199	—	—	—
—	—	CCA00801	CF0215	—
—	—	CCA00800	CF0216	—
—	—	CCA00799	CF0217	—
—	—	CCA00797	CF0218	—
—		CCA00795	CF0219	—
—	—	CCA00794	CF0220	—
—	—	CCA00793	—	—
CT819	TC0206	CCA00786	CF0227	CP0890*
CT846	TC0234	CCA00758*	CF0256	CP0850*
CT850	TC0239	CCA00753	CF0261	CP0845
—	—	CCA00733	CF0283	CP0823
—	—	CCA00708	—	—
—	—	CCA00702	—	—
—	—	—	—	CP0236
—	—	—	—	CP0381
—	—	—	—	CP0385
—	—	—	—	CP0386
—	—	—	—	CP0391
—	—	—	—	CP0392
—	—	—	—	CP0396
—	—	—	—	CP0450
—	—	—	—	CP0474
—	—	—	—	CP0544
—	—	—	—	CP0547
—	—	—	—	CP0549
—	—	—	—	CP0550
—	—	—	—	CP0551
—	—	—	—	CP0553
—	—	—	—	CP0554
—	—	—	—	CP0597
—	—	—	—	CP0602
—	—	—	—	CP0605
—	—	—	—	CP0607
—	—	CCA0062*	—	CP0627
—	—	—	—	CP0640
—	—	—	—	CP0641
—	—	—	—	CP0646
—	—	CCA00513	—	CP0649/797
—	—	CCA00674	CF0337	CP0675
—	—	—	—	CP0703
—	—	—	—	CP0733
—	—	—	—	CP0750
—	—	—	—	CP0763
—	—	—	—	CP0728/764/766/769
—	—	—	—	CP0795
—	—	—	—	CP0801
—	—	—	—	CP0935

^aData from Incs identified here and in [16, 18–21].
^bindicates the absence of an identifiable homologue identified by PSI-BLAST.
^c*indicates that a homologue lacks the characteristic bilobed hydrophobic domain when analyzed with Kyte and Doolittle plots
^d†indicates Inc used in PSI-BLAST.