International Journal of Genomics / 2012 / Article / Tab 2 / Research Article
Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon Table 2 Ten loci/genomic regions supported by multiple lines of evidence of being affected by directional selection during domestication/captive breeding in Atlantic salmon. Microsatellite markers are given in italics.
Pop. Linkage group Chromosome Markers Map position cM FDIST2
BayeScan Clustering of loci Annotationa
lnRH
Top hit d11 3 13699_0319 0 X X X 14711_157 0.5 X Q5R5Y3∣B3GT2_PONPY Beta-13-galactosyltransferase 2 (Beta-13-GalTase 2) (Beta-3-Gal-T2) d19 8 15784_1161 7.9 X X X Q61425∣HCDH_MOUSE Short chain 3-Hydroxyacyl-CoA dehydrogenase mitochondrial IRL BHMS365 24.9 X d14 21 BHMS311 1.5 X X s13 19 16938_271 25.9 X X gnl∣CDD∣29599 cd01417 Ribosomal_L19e_E Ribosomal protein L19e eukaryotic. L19e 16938_888 25.9 X gnl∣CDD∣29599 cd01417 Ribosomal_L19e_E Ribosomal protein L19e eukaryotic. L19e d07 24 12320_396 46.3 X X X X sp∣P20135∣GSTT1_CHICK Glutathione S-Transferase theta-1 (GST-CL1) (GST class-theta) SSsp2216 46.3 X X s22 17 12302_129 7 X X sp∣Q9JJL3∣SO1B2_MOUSE Solute carrier organic anion transporter family member 1B2 SWE 12302_196 7 X X sp∣Q9JJL3∣SO1B2_MOUSE Solute carrier organic anion transporter family member 1B2 d33 28 14501_498 0 X 16532_248 52.5 X X sp∣P63030∣BR44L_MOUSE Brain protein 44-like protein 12035_0440 54 X X sp∣Q98967∣CYT_ONCKE Cystatin precursor d18 23 14186_163 25.7 X X X sp∣Q96KP1∣EXOC2_HUMAN Exocyst complex component 2 (Exocyst complex component Sec5) Ssa85DU 36.4 X CAN d06 12 16937_940 57.4 X X sp∣P24844∣MLRN_HUMAN Myosin regulatory light chain 2 smooth muscle isoform (Myosin RLC) 17580_1116 57.8 X X sp∣Q6NWF6∣K2C8_BRARE Keratin type II cytoskeletal 8 (Cytokeratin-8) (CK-8) (Keratin-8) d23 16 14053_0820 33.4 X X
a BLASTX search against CDD and Swissprot databases [28 ].
