Research Article

In Silico Identification and Comparative Genomics of Candidate Genes Involved in Biosynthesis and Accumulation of Seed Oil in Plants

Table 3

Oil synthesis and accumulation genes in Arabidopsis, Brassica rapa, castor bean, and soybean.

CategoryGene nameAccession numberCoding DNA sequence length (bp)
ArabidopsisBrassica rapaCastor beanSoybeanArabid-opsisBrassica rapaCastor beanSoybean

ACCaseACCaseAt1g36180X7738229908.m005991Glyma04g115505997219367236834
Alpha-carboxyl transferaseAt2g38040AY53867527798.m000585Glyma18g422802346229523552130
Beta-carboxyl transferaseATCG00500Z5086828890.m000006636984528
Biotin carboxylaseAt5g35360AY03441030185.m000954Glyma05g364501683160819351731
Biotin carrierAt5g15530AY53867429630.m000809
29929.m004560
Glyma08g031207267837809241611

Malonyl Co-A transacylaseAt2g30200AJ00704630113.m001448Glyma18g0650011049939871113
Beta-Ketoacyl ACP synthase IAt5g46290AF24451929693.m002034Glyma10g046801422138014371452
Beta-Ketoacyl ACP synthase IIAt1g74960AF24452029739.m003711Glyma13g190101770130220131305
Beta-Ketoacyl ACP synthase IIIAt1g62640AF17985428455.m000368Glyma09g41380
Glyma15g00550
Glyma18g44350
121518612331194
831
1254
Elongase3-Ketoacyl- acp- dehydraseAt1g62610
At3g46170
At3g55290
At3g55310
AF38214630147.m013777Glyma08g10760
Glyma18g01280
924
867
822
822
735924
963
3-Ketoacyl- Co-A reductase (KAR)At1g24360AY19619729929.m004732Glyma11g37320927960987963
Enoyl-ACP reductase (ENR)At2g05990AJ243087
AJ243088
AJ243089
AJ243090
x95462
27843.m000160
29650.m000277
Glyma11g10770
Glyma12g03060
Glyma18g31780
111551158
1161
1161
1164
1158
1083
1083
1176
1203
1533
Hydroxyacyl ACP Dehydrase (HD)At2g22230AF38214630200.m000354Glyma05g24650
Glyma08g07870
Glyma08g19200
Glyma15g05800
663672534417
513
219
822
Plastidial 1 acylglycerol phosphate acyltransferaseAt4g3058029687.m000572Glyma06g28540
Glyma12g28470
10719872406
1776
Plastidial Glycerol phosphate acyltransferaseAt1g3220030068.m002660Glyma09g34110138012361413

Monogalactosylacylglycerol desaturase (FAD 5)At3g1585029841.m002863Glyma07g03370
Glyma08g22730
111611611101
1173
Stearoyl-ACP desaturaseAt1g43800
At2g43710
At3g02610
At3g02630
At3g02620
At5g16230
At5g16240
X63364
X74782
AY642537
27985.m000877
28470.m000428
29929.m004515
30020.m000203
Glyma02g15600
Glyma07g32850
Glyma13g08970
Glyma14g27990
1176
1206
984
1191
984
1206
1185
1200
1206
1200
1176
336
960
1191
1176
1176
1185
1014
Oleate desaturase (FAD 6)At4g30950AY642535
AY642540
29696.m000105Glyma02g3646013471332
1293
8251287
DesaturaseLinoleate desaturase (FAD 7)At3g11170AY592974
AY599884
FJ985689
FJ985690
FJ985691
L01418
L22962
28176.m000273
29681.m001360
29814.m000719
Glyma01g29630
Glyma03g07570
Glyma07g18350
14671320
1152
1134
1299
1335
1152
1134
1359
1131
1383
1359
1362
1362
Linoleate desaturase (FAD 8)At5g05580AY592974
AY599884
FJ985691
28176.m000273
29681.m001360
29814.m000719
Glyma01g29630
Glyma03g07570
Glyma07g18350
1308
1152
1320
1152
1335
1359
1131
1383
1359
1362
1362
ER-Oleate desaturase (FAD 2)At3g12120AY577313
DQ518276
DQ518277
DQ518278
FJ907397
FJ907398
FJ907399
FJ907400
FJ907401
FJ952144
28035.m000362Glyma03g30070
Glyma09g17170
Glyma10g42470
Glyma19g32940
Glyma20g24530
11521155
780
780
780
1155
1155
1155
1155
1155
1155
11641152
1161
1140
1152
1140
ER-Linoleate desaturase (FAD 3)At2g29980AY592974
AY599884
FJ985689
L01418
L22962
29681.m001360Glyma01g29630
Glyma07g18350
11611320
1152
1134
1152
1134
11311359
1362

ThioesteraseAcyl-ACP thioesterase (FatA)At3g25110
At4g13050
X8784230217.m000262
29842.m003515
Glyma08g46360
Glyma18g36130
1089
1104
11761269
753
1191
1125
Palmitoyl-ACP thioesterase (FatB)At1g08510DQ847275
Fj715952
29848.m004677Glyma0421910
Glyma05g08060
Glyma06g23560
Glyma17g12940
12391245
1239
12601332
1251
1422
1251

TAG synthesisDiacylglycerol Acyltranferase (DGAT 1)At2g19450AF16443429912.m005373Glyma13g165601593151218301347
Diacylglycerol Acyltranferase (DGAT 2)At3g51520AF15522429682.m000581Glyma09g327909451056768987
Lysophosphosphatidic acid acyltransferase (LPAAT)At1g01610
At1g51260
At1g78690
At1g80950
At2g27090
At2g38110
At3g05510
At3g11430
At3g18850
At3g57650
At4g00400
At5g06090
AF111161
Gu045434
GU04535
Gu045436
Z49860
27810.m000646
29851.m002448
30169.m006433
30170.m013990
29736.m002070
29822.m003441
29969.m000267
30174.m008615
Glyma01g27900
Glyma03g01070
Glyma03g14180
Glyma07g07580
Glyma07g17720
Glyma10g23560
Glyma18g42580
1512
1119
873
1140
2232
1506
1347
1509
1146
1170
1503
1503
1035
1173
1176
1173
936
1188
1188
1050
852
738
1515
1539
594
1506
1536
678
858
675
1491
1428
1620
Diacylglycerol cholinephosphotransferaseAt3g25585AY17956030138.m003845Glyma12g08720
Glyma0214210
117014491449771
1188
Digalactosyldiacyglycerol synthase (DGD1)At3g1167028726.m000069Glyma03g36050
Glyma19g38720
238825382352
2361
ER Phosphatidate PhosphataseAt1g1508029586.m000620
29660.m000760
29660.m000759
29660.m000759
Glyma09g18450
Glyma10g41580
Glyma20g25650
813954
564
930
945
957
969
909

Oil body proteinCaleosinAt1g23240
At1g23250
At1g70670
At1g70680
At2g33380
At4g26740
At5g55240
AY966447
DQ140380
29673.m000932
30008.m000820
Glyma3g41030
Glyma09g22310
Glyma09g22330
Glyma09g22580
Glyma09g25350
Glyma10g33350
Glyma19g43680
Glyma20g34300
669
663
588
552
711
738
732
717
705
597
702
723
615
606
384
384
570
723
402
OleosinAt1g48990
At2g25890
At3g01570
At3g18570
At3g27660
At4g25140
At5g40420
At5g51210
DQ328612
S37032
29794.m003372
30147.m013891
30147.m014333
Glyma05g07880
Glyma14g15020
Glyma17g13120
510
450
552
501
576
522
600
426
699
426
564
489
495
492
492
471