Research Article

Gene Expression Profiling of Grass Carp (Ctenopharyngodon idellus) and Crisp Grass Carp

Table 5

Differentially expressed genes involved in metal ions and vitamin metabolism in the muscle of crisp grass carp and grass carp.

Gene nameAffy-IDFold change

Calcium
 Rhomboid, veinlet-like 3 (Drosophila); hypothetical LOC100005244Dr.25770.2.A1_at6.680544
 Stromal cell-derived factor-4Dr.20092.1.S1_at4.935459
 Protocadherin-10aDr.21790.1.A1_at4.905736
 CalreticulinDr.25177.1.S1_at3.450125
 zgc:123242Dr.13408.1.S1_at2.546485
 Parvalbumin-3Dr.15359.1.S1_at1.997458
 Calmodulin 2b, /// calmodulin 3b /// calmodulin 3a /// calmodulin 2a /// calmodulin 1b ///
  zgc:55813 /// calmodulin 1a
Dr.7638.1.S1_at1.549420
 zgc:136759Dr.19975.1.S1_at0.336455
 Guanylate cyclase activator 1-ADr.12592.1.S1_at0.30074
 Desmocollin 2-likeDr.934.1.A1_at0.23301
Iron ion binding
 zgc:92245; hypothetical LOC792323Dr.20662.1.A1_at4.470659
 Transferrin-a; Rho-class glutathione S-transferaseDr.1889.1.S1_at3.685072
 Cytochrome P450, family 26, subfamily b, polypeptide-1Dr.180.1.A1_at3.092533
 Cytochrome c oxidase, subunit VIIcDr.7444.1.S1_at2.380282
 Cytochrome c oxidase subunit 1Dr.20553.2.A1_at2.223735
 Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase),
  alpha polypeptide 2; hypothetical protein LOC100151456
Dr.19144.1.A1_at0.25343
Zinc ion binding
 Similar to zinc finger protein-135 (zinc finger protein 61) (zinc finger protein 78-like 1);
  zgc:174288; zgc:110249
Dr.11066.2.A1_a_at13.94189
 si:ch211-222k6.1; si:ch211-222k6.2; zgc:174564Dr.23520.1.A1_at12.04316
 Similar to COASTERDr.14346.2.A1_x_at11.16127
 zgc:174263Dr.15456.1.A1_at6.072371
 Muscleblind-like (Drosophila); hypothetical protein LOC100150760; hypothetical protein
  LOC100150761
Dr.25973.1.A1_at6.004707
 Ubiquitin specific protease-16Dr.21873.1.A1_at4.844206
 si:rp71-15k1.2; myeloid/lymphoid or mixed-lineage leukemia-4aDr.9377.1.A1_at4.679487
 si:ch211-45m15.2Dr.8200.1.S1_at4.653204
 zic family member-2 (odd-paired homolog, Drosophila) bDr.10614.1.A1_at4.526444
 zgc:77724Dr.14413.1.A1_at4.213999
 zgc:162730Dr.3936.1.A1_at3.742291
 RNA binding motif protein 4.1Dr.21594.1.A1_at3.487187
 l(3)mbt-like 2 (Drosophila)Dr.17271.1.A1_at3.197401
 LIM and SH3 protein-1Dr.25320.1.A1_at2.882738
 LIM and calponin homology domains-1Dr.10986.1.A1_at2.689072
 zgc:158673Dr.4838.1.A1_at2.108265
 si:ch73-38p6.1Dr.3142.1.S1_at1.823564
 zgc:56116Dr.745.1.A1_at1.590587
 Phosphate regulating gene with homologues to endopeptidases on the X chromosomeDr.25529.1.S1_at1.544958
 Zinc finger protein-207, aDr.93.1.A1_a_at0.65725
 Retinoic acid receptor, alpha bDr.305.1.S1_at0.566773
 Alpha thalassemia/mental retardation syndrome X-linked, like; alpha thalassemia/mental
  retardation syndrome X-linked homolog (human)
Dr.26404.2.S1_at0.502432
 APC11 anaphase promoting complex subunit 11 homolog Dr.18189.1.S1_at0.491208
 zgc:174649; similar to zinc finger protein-180 (HHZ168); hypothetical LOC570013; zgc:174651;
  similar to zinc finger protein-560; zgc:173603
Dr.21894.1.A1_at0.474262
 zgc:56628Dr.18443.1.S1_at0.462863
 Carboxypeptidase-A5Dr.4882.1.S1_at0.333607
 zgc:153061Dr.6513.1.A1_a_at0.323466
 zgc:153171; F-box only protein 11-likeDr.12361.1.S1_at0.308205
 wu:fi20g04Dr.7293.1.S1_at0.262579
 Novel protein similar to human rearranged L-myc fusion sequence (RLF)Dr.15042.1.A1_at0.256942
 si:dkeyp-89d7.1Dr.4953.1.S1_at0.236327
 Zinc finger, FYVE domain containing 21Dr.3023.1.S1_at0.216677
 wu:fd12d03Dr.2692.1.A1_at0.210638
 Six-cysteine containing astacin protease-1Dr.21939.1.A1_at0.201674
 Janus kinase-1Dr.18349.1.A1_at0.188976
 zgc:158455Dr.15141.1.A1_at0.184993
 LIM homeobox-1aDr.24443.1.A1_at0.182767
 Zinc fingers and homeoboxes 3Dr.26180.1.A1_at0.150721
 Transcription elongation factor A (SII), 3Dr.15634.1.S1_at0.093517
Vitamin binding
 Cysteine conjugate-beta lyase; cytoplasmic (glutamine transaminase K, kynurenine
  aminotransferase)
Dr.2828.2.A1_at9.133776
 Similar to Kynurenine-oxoglutarate transaminase-3 (Kynurenine-oxoglutarate transaminase
  III) (Kynurenine aminotransferase III) (KATIII) (cysteine-S-conjugate beta-lyase 2); cysteine
  conjugate-beta lyase-2
Dr.18800.1.S1_at1.518084
 Procollagen-proline, 2-oxoglutarate 4-dioxygenase, alpha polypeptide 2; hypothetical protein
  LOC100151456
Dr.19144.1.A1_at0.25343

Fold change = (signal intensity of a gene in the muscle of crisp grass carp)/(signal intensity of the gene in the muscle of grass carp).