Research Article

Gene Expression Profiling of Grass Carp (Ctenopharyngodon idellus) and Crisp Grass Carp

Table 7

Differentially expressed genes involved in other GOs (gene ontology) in the muscle of crisp grass carp and grass carp.

Gene nameAffy-IDFold change

Immune system development
 Activin A receptor, type I likeDr.606.1.S2_at11.01876
 Heat shock cognate 70-kd proteinNM_131397.23.284166
 SNF related kinase-1Dr.25951.1.A1_at3.016243
 Heat shock protein 90 kDa alpha, cytosolic, B1NM_131310.10.302405
 runt-related transcription factor-3Dr.10668.1.S2_at0.174100
Immunoglobulin-like domain
 Major histocompatibility complex class I UDA geneDr.22347.1.S1_at11.02728
 Neural cell adhesion molecule-2Dr.12598.1.S1_at5.365372
 Semaphorin-3abDr.8112.1.S1_at3.37293
 Fibroblast growth factor receptor-4Dr.409.1.S1_at1.746774
 Junctional adhesion molecule-3Dr.4725.1.A1_at0.618889
 BasiginDr.16700.1.A1_at0.305291
 Nexilin (F actin binding protein)Dr.4859.1.A1_at0.139300
 zgc:171897Dr.21314.1.A1_at0.116185
Embryonic morphogenesis
 Activin A receptor, type I likeDr.606.1.S2_at11.018760
 traf and tnf receptor associated proteinDr.18071.2.A1_at4.529896
 Eukaryotic translation initiation factor 3, subunit E, b; eukaryotic translation
  initiation factor 3, subunit E, a
Dr.5119.1.A1_at4.241705
 Chemokine (C-X-C motif) ligand-12a (stromal cell-derived factor 1)Dr.822.1.S3_at3.862025
 Cytochrome P-450, family-26, subfamily b, polypeptide 1Dr.180.1.A1_at3.092533
 One-eyed pinheadDr.581.1.S1_at2.272094
 Similar to frizzled homolog 7b; frizzled homolog 7b; frizzled homolog 7aDr.5454.1.S1_at2.128164
 Axin-1Dr.17733.1.S1_at0.505078
 Pre-B-cell leukemia transcription factor 1a; zgc:158824; pre-B-cell leukemia transcription
  factor 4; hypothetical LOC100004634; hypothetical protein LOC100150879
Dr.4926.1.S1_at0.175405
Fin morphogenesis
 Activin A receptor, type I likeDr.606.1.S2_at11.01876
 Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)Dr.822.1.S3_at3.862025
 Axin-1Dr.17733.1.S1_at0.505078
Golgi apparatus
 Stromal cell-derived factor-4Dr.20092.1.S1_at4.935459
 Clathrin, light chain (Lca)Dr.26380.1.A1_at1.980670
 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2Dr.11084.1.A1_at1.701953
 Partial optokinetic response-bDr.9437.1.A1_at1.616283
 Adaptor-related protein complex 1, sigma 1 subunitDr.18735.1.A1_at0.409458
 Beta-3-galactosyltransferaseDrAffx.1.31.S1_at0.239189
Neuron differentiation
 T-box 24Dr.18309.1.S1_at5.279783
 AcetylcholinesteraseDr.15722.1.S1_at4.445239
 Neurogenin 1Dr.555.1.S1_at4.347208
 Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)Dr.822.1.S3_at3.862025
 Semaphorin 3abDr.8112.1.S1_at3.372930
 N-Ethylmaleimide-sensitive factorDr.9155.1.S1_at0.541262
 Survival of motor neuron protein interacting protein 1Dr.2724.1.S1_at0.480291
 Pre-B-cell leukemia transcription factor 1a; zgc:158824; pre-B-cell leukemia transcription
  factor-4; hypothetical LOC100004634; hypothetical protein LOC100150879
Dr.4926.1.S1_at0.175405
Organelle membrane
 Mitofusin-1Dr.14642.1.S1_at7.021206
 Dullard homologDr.7581.1.A1_at5.367876
 Translocase of outer mitochondrial membrane-40 homolog, likeDr.15545.1.A1_at4.868413
 Cytochrome c oxidase subunit 1Dr.20553.2.A1_at2.223735
 Clathrin, light chain (Lca)Dr.26380.1.A1_at1.980670
 Translocase of inner mitochondrial membrane-17 homolog A (yeast)Dr.3096.1.A1_at1.925030
 6.8 kDa mitochondrial proteolipid-likeDr.1429.1.S1_at1.575235
 zgc:86898Dr.661.1.S1_at0.496350
 Adaptor-related protein complex 1, sigma 1 subunitDr.18735.1.A1_at0.409458
 Carnitine palmitoyltransferase IIDr.146.1.A1_at0.308770
 zgc:112986Dr.20668.1.A1_at0.307912
 ADP-ribosylation factor-like 8BaDr.7615.1.A1_at0.249671
 Asparagine-linked glycosylation 6 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase)Dr.9628.1.A1_at0.199667

Fold change = (signal intensity of a gene in the muscle of crisp grass carp)/(signal intensity of the gene in the muscle of grass carp).