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International Journal of Genomics
Volume 2015, Article ID 125048, 14 pages
Research Article

High-Throughput Sequencing Reveals Diverse Sets of Conserved, Nonconserved, and Species-Specific miRNAs in Jute

Molecular Biology Laboratory, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka 1000, Bangladesh

Received 11 November 2014; Revised 13 February 2015; Accepted 23 February 2015

Academic Editor: Mohamed Salem

Copyright © 2015 Md. Tariqul Islam et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

Supplementary file-1 contains total and unique reads of different RNAs that have been sequenced. Supplementary file-2 contains all the known miRNAs in jute seedling that have been found in this study. Supplementary file-3 covers the secondary structures of novel miRNA in jute predicted using Mfold. Supplementary file-4 holds the detail of novel jute miRNAs. Supplementary file-5 contains the detail of predicted targets for some of the known miRNAs. Supplementary file-6 covers the detail of predicted targets for novel miRNAs. Supplementary file-7 contains the biological functions of predicted targets. Supplementary file-8 contains the detail of pathways for predicted miRNAs. Supplementary file-9 contains the validation of predicted targets by another tool.

  1. Supplementary Materials