High-Throughput Sequencing Reveals Diverse Sets of Conserved, Nonconserved, and Species-Specific miRNAs in Jute

Table 3

Potential novel miRNAs found in jute.

miRNA name	Number of reads	Mature miRNA sequence	Mature miRNA length	MFE (kcal/mol)
col-miRN1-5p	1448	GUGGGCGUGCCGGAGUGGUUA	21	−28.9
col-miRN2-3p	219	AGAGGGACUAUGGCCGCUUA	20	−53.5
col-miRN3-3p	17	UCGGUUUUGAAUUAGAGACGU	21	−85
col-miRN4-3p	14	UGAUGAUUGUGAAGAAGAUGA	21	−66.34
col-miRN5-3p	32	AGAGGCUCGGUGAAAUAGACAU	22	−24.62
col-miRN6-5p	11	UUCGUCCCCGGCAACGGCGCCA	22	−66.6
col-miRN7-5p	7	UUUUUUAAUUUUUUAUUUAUC	21	−21
col-miRN8-5p	20	GUUGAUCAAGUUGUGGAUGGC	21	−79.32
col-miRN9-3p	2	AAACUUCGAAUUGGGAGGGC	20	−89.3
col-miRN10-3p	3	UGAAUGAUUUCGGACCAGGCU	21	−48.3
col-miRN11-3p	2	GUAAGAAGGGGUAGAGAAAAU	21	−34.9
col-miRN12-3p	5	AAGAUAGAGAGCACAGAUGAU	21	−51.1
col-miRN13-5p	3	GGCGCUGCCUACUCACUCGGACA	23	−40.77
col-miRN14-3p	7	GUGAGGCUGGUUUCACAGAGCA	22	−39.1
col-miRN15-5p	6	GAGUGCAGCCAAGGAUGACUU	21	−64.9
col-miRN16-5p	4	UCAAGGUGGAGAUUGUUAGGA	21	93.4
col-miRN17-5p	6	UUAUACGAUGUGGGAUAUUAC	21	−105.3