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International Journal of Genomics
Volume 2015, Article ID 142197, 12 pages
http://dx.doi.org/10.1155/2015/142197
Research Article

Water Properties Influencing the Abundance and Diversity of Denitrifiers on Eichhornia crassipes Roots: A Comparative Study from Different Effluents around Dianchi Lake, China

Institute of Agricultural Resources and Environment and Institute of Agro-biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China

Received 20 December 2014; Revised 1 April 2015; Accepted 1 April 2015

Academic Editor: Ferenc Olasz

Copyright © 2015 Neng Yi et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. M. H. Hu, Y. S. Ao, X. E. Yang, and T. Q. Li, “Treating eutrophic water for nutrient reduction using an aquatic macrophyte (Ipomoea aquatica Forsskal) in a deep flow technique system,” Agricultural Water Management, vol. 95, no. 5, pp. 607–615, 2008. View at Publisher · View at Google Scholar · View at Scopus
  2. Q. Yi, Y. Kim, and M. Tateda, “Evaluation of nitrogen reduction in water hyacinth ponds integrated with waste stabilization ponds,” Desalination, vol. 249, no. 2, pp. 528–534, 2009. View at Publisher · View at Google Scholar · View at Scopus
  3. M. Rodríguez, J. Brisson, G. Rueda, and M. S. Rodríguez, “Water quality improvement of a reservoir invaded by an exotic macrophyte,” Invasive Plant Science and Management, vol. 5, no. 2, pp. 290–299, 2012. View at Publisher · View at Google Scholar · View at Scopus
  4. Z. Wang, Z. Zhang, J. Zhang, Y. Zhang, H. Liu, and S. Yan, “Large-scale utilization of water hyacinth for nutrient removal in Lake Dianchi in China: the effects on the water quality, macrozoobenthos and zooplankton,” Chemosphere, vol. 89, no. 10, pp. 1255–1261, 2012. View at Publisher · View at Google Scholar · View at Scopus
  5. N. Yi, Y. Gao, X.-H. Long et al., “Eichhornia crassipes cleans wetlands by enhancing the nitrogen removal and modulating denitrifying bacteria community,” CLEAN—Soil, Air, Water, vol. 42, no. 5, pp. 664–673, 2014. View at Publisher · View at Google Scholar · View at Scopus
  6. Y. Gao, N. Yi, Y. Wang et al., “Effect of Eichhornia crassipes on production of N2 by denitrification in eutrophic water,” Ecological Engineering, vol. 68, pp. 14–24, 2014. View at Publisher · View at Google Scholar · View at Scopus
  7. V. Gagnon, F. Chazarenc, Y. Comeau, and J. Brisson, “Influence of macrophyte species on microbial density and activity in constructed wetlands,” Water Science and Technology, vol. 56, no. 3, pp. 249–254, 2007. View at Publisher · View at Google Scholar · View at Scopus
  8. R. D. Sooknah and A. C. Wilkie, “Nutrient removal by floating aquatic macrophytes cultured in anaerobically digested flushed dairy manure wastewater,” Ecological Engineering, vol. 22, no. 1, pp. 27–42, 2004. View at Publisher · View at Google Scholar · View at Scopus
  9. J. Green and B. J. M. Bohannan, “Spatial scaling of microbial biodiversity,” Trends in Ecology & Evolution, vol. 21, no. 9, pp. 501–507, 2006. View at Publisher · View at Google Scholar · View at Scopus
  10. C. L. Lauber, M. Hamady, R. Knight, and N. Fierer, “Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale,” Applied and Environmental Microbiology, vol. 75, no. 15, pp. 5111–5120, 2009. View at Publisher · View at Google Scholar · View at Scopus
  11. D. Radojkovic and J. Kušic, “Silver staining of denaturing gradient gel electrophoresis gels,” Clinical Chemistry, vol. 46, no. 6, pp. 883–884, 2000. View at Google Scholar · View at Scopus
  12. H. F. Luo, H. Y. Qi, and H. X. Zhang, “Assessment of the bacterial diversity in fenvalerate-treated soil,” World Journal of Microbiology and Biotechnology, vol. 20, no. 5, pp. 509–515, 2004. View at Publisher · View at Google Scholar · View at Scopus
  13. D. Roesti, R. Gaur, B. N. Johri et al., “Plant growth stage, fertiliser management and bio-inoculation of arbuscular mycorrhizal fungi and plant growth promoting rhizobacteria affect the rhizobacterial community structure in rain-fed wheat fields,” Soil Biology and Biochemistry, vol. 38, no. 5, pp. 1111–1120, 2006. View at Publisher · View at Google Scholar · View at Scopus
  14. J. Lepš and P. Šmilauer, Multivariate Analysis of Ecological Data using CANOCO, Cambridge University Press, Cambridge, UK, 2003. View at Publisher · View at Google Scholar
  15. A. J. Burgin and S. K. Hamilton, “Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways,” Frontiers in Ecology and the Environment, vol. 5, no. 2, pp. 89–96, 2007. View at Publisher · View at Google Scholar · View at Scopus
  16. A. C. Mosier and C. A. Francis, “Denitrier abundance and activity across the San Francisco Bay estuary,” Environmental Microbiology Reports, vol. 2, no. 5, pp. 667–676, 2010. View at Publisher · View at Google Scholar · View at Scopus
  17. E. Lyautey, S. Hallin, S. Teissier et al., “Abundance, activity and structure of denitrifier communities in phototrophic river biofilms (River Garonne, France),” Hydrobiologia, vol. 716, no. 1, pp. 177–187, 2013. View at Publisher · View at Google Scholar · View at Scopus
  18. Y. Kim and W.-J. Kim, “Roles of water hyacinths and their roots for reducing algal concentration in the effluent from waste stabilization ponds,” Water Research, vol. 34, no. 13, pp. 3285–3294, 2000. View at Publisher · View at Google Scholar · View at Scopus
  19. S. Kouki, N. Saidi, A. B. Rajeb et al., “Potential of a polyculture of Arundo donax and Typha latifolia for growth and phytotreatment of wastewater pollution,” African Journal of Biotechnology, vol. 11, no. 87, pp. 15341–15352, 2012. View at Google Scholar
  20. C. C. Tanner, “Plants for constructed wetland treatment systems—a comparison of the growth and nutrient uptake of eight emergent species,” Ecological Engineering, vol. 7, no. 1, pp. 59–83, 1996. View at Publisher · View at Google Scholar · View at Scopus
  21. A. M. Baxter, L. Johnson, T. Royer, and L. G. Leff, “Spatial differences in denitrification and bacterial community structure of streams: relationships with environmental conditions,” Aquatic Sciences, vol. 75, no. 2, pp. 275–284, 2013. View at Publisher · View at Google Scholar · View at Scopus
  22. B. Wang, B. Huang, W. Jin et al., “Occurrence, distribution, and sources of six phenolic endocrine disrupting chemicals in the 22 river estuaries around Dianchi Lake in China,” Environmental Science and Pollution Research, vol. 20, no. 5, pp. 3185–3194, 2013. View at Publisher · View at Google Scholar · View at Scopus
  23. Y. Huang, H. Wen, J. Cai et al., “Key aquatic environmental factors affecting ecosystem health of streams in the Dianchi Lake Watershed, China,” Procedia Environmental Sciences, vol. 2, pp. 868–880, 2010. View at Publisher · View at Google Scholar
  24. C. W. Knapp, W. K. Dodds, K. C. Wilson, J. M. O'Brien, and D. W. Graham, “Spatial heterogeneity of denitrification genes in a highly homogenous urban stream,” Environmental Science & Technology, vol. 43, no. 12, pp. 4273–4279, 2009. View at Publisher · View at Google Scholar · View at Scopus
  25. A. García-Lledó, A. Vilar-Sanz, R. Trias, S. Hallin, and L. Bañeras, “Genetic potential for N2O emissions from the sediment of a free water surface constructed wetland,” Water Research, vol. 45, no. 17, pp. 5621–5632, 2011. View at Publisher · View at Google Scholar · View at Scopus
  26. K. K. Moorhead and K. R. Reddy, “Oxygen transport through selected aquatic macrophytes,” Journal of Environmental Quality, vol. 17, no. 1, pp. 138–142, 1988. View at Google Scholar · View at Scopus
  27. C. M. Jones and S. Hallin, “Ecological and evolutionary factors underlying global and local assembly of denitrifier communities,” The ISME Journal, vol. 4, no. 5, pp. 633–641, 2010. View at Publisher · View at Google Scholar · View at Scopus
  28. L. Philippot, J. Čuhel, N. P. A. Saby et al., “Mapping field-scale spatial patterns of size and activity of the denitrifier community,” Environmental Microbiology, vol. 11, no. 6, pp. 1518–1526, 2009. View at Publisher · View at Google Scholar · View at Scopus
  29. C. Desnues, V. D. Michotey, A. Wieland et al., “Seasonal and diel distributions of denitrifying and bacterial communities in a hypersaline microbial mat (Camargue, France),” Water Research, vol. 41, no. 15, pp. 3407–3419, 2007. View at Publisher · View at Google Scholar · View at Scopus
  30. Y. J. Yu, J. Guan, Y. W. Ma et al., “Aquatic environmental quality variation in Dianchi lake watershed,” Procedia Environmental Sciences, vol. 2, pp. 76–81, 2010. View at Publisher · View at Google Scholar
  31. J. L. Baeseman, R. L. Smith, and J. Silverstein, “Denitrification potential in stream sediments impacted by acid mine drainage: effects of pH, various electron donors, and iron,” Microbial Ecology, vol. 51, no. 2, pp. 232–241, 2006. View at Publisher · View at Google Scholar · View at Scopus
  32. B. C. Crump and J. E. Hobbie, “Synchrony and seasonality in bacterioplankton communities of two temperate rivers,” Limnology and Oceanography, vol. 50, no. 6, pp. 1718–1729, 2005. View at Publisher · View at Google Scholar · View at Scopus
  33. Z. H. Liu, S. B. Huang, G. P. Sun, Z. Xu, and M. Xu, “Phylogenetic diversity, composition and distribution of bacterioplankton community in the Dongjiang River, China,” FEMS Microbiology Ecology, vol. 80, no. 1, pp. 30–44, 2012. View at Publisher · View at Google Scholar · View at Scopus
  34. G. Braker, J. Schwarz, and R. Conrad, “Influence of temperature on the composition and activity of denitrifying soil communities,” FEMS Microbiology Ecology, vol. 73, no. 1, pp. 134–148, 2010. View at Publisher · View at Google Scholar · View at Scopus
  35. M. D. Wallenstein, D. D. Myrold, M. Firestone, and M. Voytek, “Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods,” Ecological Applications, vol. 16, no. 6, pp. 2143–2152, 2006. View at Publisher · View at Google Scholar · View at Scopus
  36. J. K. M. Walker, K. N. Egger, and G. H. R. Henry, “Long-term experimental warming alters nitrogen-cycling communities but site factors remain the primary drivers of community structure in high arctic tundra soils,” The ISME Journal, vol. 2, no. 9, pp. 982–995, 2008. View at Publisher · View at Google Scholar · View at Scopus
  37. M. A. Gómez, E. Hontoria, and J. González-López, “Effect of dissolved oxygen concentration on nitrate removal from groundwater using a denitrifying submerged filter,” Journal of Hazardous Materials, vol. 90, no. 3, pp. 267–278, 2002. View at Publisher · View at Google Scholar · View at Scopus
  38. S. Hallin, C. M. Jones, M. Schloter, and L. Philippot, “Relationship between n-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment,” The ISME Journal, vol. 3, no. 5, pp. 597–605, 2009. View at Publisher · View at Google Scholar · View at Scopus
  39. W. H. Hartman, C. J. Richardson, R. Vilgalys, and G. L. Bruland, “Environmental and anthropogenic controls over bacterial communities in wetland soils,” Proceedings of the National Academy of Sciences of the United States of America, vol. 105, no. 46, pp. 17842–17847, 2008. View at Publisher · View at Google Scholar · View at Scopus
  40. I. R. Booth, “Regulation of cytoplasmic pH in bacteria,” Microbiological Reviews, vol. 49, no. 4, pp. 359–378, 1985. View at Google Scholar · View at Scopus
  41. W. Stumm and J. J. Morgan, Aquatic Chemistry: Chemical Equilibria and Rates in Natural Waters, John Wiley & Sons, New York, NY, USA, 2012.
  42. M. Kühl, L. F. Rickelt, and R. Thar, “Combined imaging of bacteria and oxygen in biofilms,” Applied and Environmental Microbiology, vol. 73, no. 19, pp. 6289–6295, 2007. View at Publisher · View at Google Scholar · View at Scopus
  43. C. McVea and C. E. Boyd, “Effects of waterhyacinth cover on water chemistry, phytoplankton, and fish in ponds,” Journal of Environmental Quality, vol. 4, no. 3, pp. 375–378, 1975. View at Publisher · View at Google Scholar
  44. S. R. Carrino-Kyker, K. A. Smemo, and D. J. Burke, “The effects of pH change and NO3- pulse on microbial community structure and function: a vernal pool microcosm study,” FEMS Microbiology Ecology, vol. 81, no. 3, pp. 660–672, 2012. View at Publisher · View at Google Scholar · View at Scopus
  45. K. Kloos, A. Mergel, C. Rösch, and H. Bothe, “Denitrification within the genus Azospirillum and other associative bacteria,” Australian Journal of Plant Physiology, vol. 28, no. 9, pp. 991–998, 2001. View at Google Scholar · View at Scopus
  46. I. N. Throbäck, K. Enwall, Å. Jarvis, and S. Hallin, “Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE,” FEMS Microbiology Ecology, vol. 49, no. 3, pp. 401–417, 2004. View at Publisher · View at Google Scholar · View at Scopus
  47. V. Michotey, V. Méjean, and P. Bonin, “Comparison of methods for quantification of cytochrome cd1-denitrifying bacteria in environmental marine samples,” Applied and Environmental Microbiology, vol. 66, no. 4, pp. 1564–1571, 2000. View at Publisher · View at Google Scholar · View at Scopus
  48. G. Braker and J. M. Tiedje, “Nitric oxide reductase (norB) genes from pure cultures and environmental samples,” Applied and Environmental Microbiology, vol. 69, no. 6, pp. 3476–3483, 2003. View at Publisher · View at Google Scholar · View at Scopus
  49. S. Hallin and P.-E. Lindgren, “PCR detection of genes encoding nitrite reductase in denitrifying bacteria,” Applied and Environmental Microbiology, vol. 65, no. 4, pp. 1652–1657, 1999. View at Google Scholar · View at Scopus