Quantification and Gene Expression Analysis of Histone Deacetylases in Common Bean during Rust Fungal Inoculation

Table 1

Selected representative HDAC genes for expression analysis. GenBank protein accession number and corresponding predicted common bean homologs along with location on the common bean genome.

Gene family/class	GenBank protein accession number	Phytozome common bean CDS number	HDACs names	Location on the bean genome; (chromosome)	Corresponding model organism
RPD3/HDA1 family class I	AAC50038; AAK0712.1	Phvul.009G115300.1	PvRPD3	9	Zea mays; Oryza sativa
	BAB10553	Phvul.003G203800.1	PvHDA6	6	A. thaliana
Class II	NP_200915; NP 200914	Phvul.003G185200.1	PvHDA18	3	A. thaliana
Class III	AAD40129	Phvul.001G034500.2	PvHDA2	1	A. thaliana
HD2 family	AAB70032	Phvul.001G186300.1	PvHD2	sg0.contig; 03923: 2769–5777	A. thaliana
SIR2 family	BAB09243	Phvul.006G057700.1	PvSRT1	6	A. thaliana