| Name of cis-element | Position | Signal sequence | Function | References |
| ABRELATERD1 | 585 | ACGTG | ABA-responsive elements | [24] |
| ABRERATCAL | 10 | MACGYGB | Ca2+-responsive and ABA upregulated genes | [25] |
| ARR1AT | 629, 634, 564, 90, 751, 883 | NGATT | ARR1 binding element involved in cytokinin signaling | [26] |
| ACGTATERD1 | 262, 585 | ACGT | Involved in upregulation by dehydration stress and dark-induced senescence | [27] |
| BIHD1OS | 595, 772, 863, 1307 | TGTCA | BELL recognition site involved in disease resistance responses | [28] |
| CAATBOX1 | 232, 787, 824 | CAAT | Common cis-acting element in promoter and enhancer regions | [29] |
| CRTDREHVCBF2 | 18 | GTCGAC | Low-temperature responsive | [30] |
| DOFCOREZM | 354, 621, 687, 1258, 1301 | AAAG | Dof1 and Dof2 binding element involved in carbon metabolism | [31] |
| DPBFCOREDCDC3 | 1089 | ACACNNG | DPBF-1 binding core sequence involved in ABA signaling | [32] |
| EBOXBNNAPA | 86, 232, 318, 714, 729, 775, 1090, 1246, 1280, 1350 | CANNTG | Cis-element binding BHLH factor is dispensable for light responsiveness | [33] |
| GATABOX | 124, 222, 290, 640, 681, 1253, 1276 | GATA | Common cis-acting element in promoter | [34] |
| GT1CONSENSUS | 475, 803, 928 | GRWAAW | Consensus GT-1 binding site in many light-regulated genes and influence the level of SA-inducible gene expression | [35] |
| IBOX | 124 | GATAAG | Conserved sequence upstream of light-regulated genes | [36] |
| MYB2CONSENSUSAT | 318, 1246, 1280, 591 | YAACKG | MYB recognition site involved in dehydration responsiveness | [37] |
| MYCCONSENSUSAT | 86, 232, 318, 714, 729, 775, 1090, 1246, 1280 | CANNTG | MYC recognition site involved in dehydration responsiveness and cold responsiveness | [38] |
| PYRIMIDINE-box | 214, 840, 869, 890 | CCTTTT | Gibberellin-response cis-element | [39] |
| ROOTMOTIFTAPOX1 | 178, 223, 546, 641, 722 | ATATT | Root specific expression | [40] |
| TATA box | 94 | TTATTT | Common cis-acting element in promoter and enhancer regions | [41] |
| WBOXATNPR1 | 887 | TTGACY | WRKY binding site, involved in many physiological processes | [10] |
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