Accelerating Smith-Waterman Alignment for Protein Database Search Using Frequency Distance Filtration Scheme Based on CPU-GPU Collaborative System

<div>The overall speedup by comparing CUDA-SWfr with the CPU-based SW method under various thresholds for 12 synthetic databases.</div>

International Journal of Genomics

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Figure 5

Figure 5: Accelerating Smith-Waterman Alignment for Protein Database Search Using Frequency Distance Filtration Scheme Based on CPU-GPU Collaborative System 

Figure 5 | Accelerating Smith-Waterman Alignment for Protein Database Search Using Frequency Distance Filtration Scheme Based on CPU-GPU Collaborative System 