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International Journal of Genomics
Volume 2015, Article ID 782635, 11 pages
http://dx.doi.org/10.1155/2015/782635
Research Article

Analysis of Polygala tenuifolia Transcriptome and Description of Secondary Metabolite Biosynthetic Pathways by Illumina Sequencing

1Research Institute of Economics Crop, Shanxi Academy of Agriculture Science, Fenyang, Shanxi 032200, China
2Modern Research Center for Traditional Chinese Medicine, Shanxi University, No. 92 Wucheng Road, Taiyuan, Shanxi 030006, China
3College of Chemistry and Chemical Engineering, Shanxi University, No. 92 Wucheng Road, Taiyuan, Shanxi 030006, China
4Institute of Materia Medica, Chinese Academy of Medical Sciences, Beijing 100050, China

Received 22 June 2015; Accepted 3 August 2015

Academic Editor: Xiaohan Yang

Copyright © 2015 Hongling Tian et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

TABLE S1: Length distribution of raw data. The 58.88 million raw reads and 11.77 gigabase pairs were sequenced with an average GC content of 43.9%, Q≥ 20 and no ambiguous “N” in P. tenuifolia. The length of reads is 101 bp. Q20 and Q30 mean that the percentages of the bases, which quality values ≥ 20 or 30.

TABLE S2: Length distribution of assembled contigs, transcripts, and unigenes. A total of 55,432,632 high-quality reads were assembled, 316,703 contigs, 145,857 transcripts and 39,625 unigenes were obtained with the N50 values was 522 bp, 1,636 bp and 1971 bp. The max length of contigs, transcripts and unigenes were 16,007 bp, 16,008 bp and 16,008 bp. The average length of contigs, transcripts and unigenes were 310.76 bp, 970 bp and 1,378 bp. The number of >N50 reads of contigs, transcripts and unigenes were 38,638, 27,911 and 9,484.

  1. Supplementary Materials