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International Journal of Genomics
Volume 2015, Article ID 950737, 8 pages
Research Article

Reduced Representation Libraries from DNA Pools Analysed with Next Generation Semiconductor Based-Sequencing to Identify SNPs in Extreme and Divergent Pigs for Back Fat Thickness

Department of Agricultural and Food Sciences (DISTAL), Division of Animal Sciences, University of Bologna, Viale Fanin 46, 40127 Bologna, Italy

Received 18 November 2014; Accepted 10 February 2015

Academic Editor: Mohamed Salem

Copyright © 2015 Samuele Bovo et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

Table S1: Number of sequenced reads and nucleotides mapped on the different pig chromosomes.

Table S2: List of SNPs included in transcribed regions.

Table S3: Overlapping positions between sequencing and PorcineSNP60 Beadchip genotyping data.

Table S4: List of the 54 SNPs showing significant differences (P<0.05) between the two libraries.

Table S5: List of SNPs that showed differences in number of alternative reads compared with the genome wide association results.

  1. Supplementary Material