| | Traits | Chr. number | Population type (size) | Marker (number) | Parental cultivars | QTL name | References |
| | PNS | 1, 4, 5, 8 | F2 (172) | RFLP, SSR, AFLP (348) | Aijiao Nante (indica), P16 (O. rufipogon) | sh1, sh4, sh5, sh8 | Xiong et al. (1999) [11] |
| | PNS | 1, 4, 8, 11 | RILs (125) | RFLP, isozyme morphological (147) | Pei-Kuh (indica), W1944 (O. rufipogon) | qSHT-1, qSHT-4, qSHT-8, qSHT-11 | Cai and Morishima (2000) [13] |
| | PNS | 1 | DH (151) | SSR (68) | Miara (japonica), C6′ (japonica) | Sh-2 | Bres-Patry et al. (2001) [12] |
| | PNS | 1, 3, 6 | RIL (120) | SSR (124) | Hwayeongbyeo (japonica), W1944 (O. rufipogon) | sh1, sh3, sh6 | Lee et al. (2005) [14] |
| | PS | 1, 2, 5, 11, 12 | F2 (156) | RFLP, RAPD (609) | Kasalath (indica), Nipponbare (japonica) | qSH1 | Konish et al. (2006) [1] |
| | PS | 3, 4, 8 | F2 (304) | SSR | CL16 (indica), IRGC 80470 (O. nivara) | sh3, sh4, sh8 | Li et al. (2006) [7] |
| | PS, BS | 7 | F2 (240) | SSR (77) | Hsh (japonica), Blue & Gundil (japonica) | sh-h | Ji et al. (2006) [5] |
| | SR | 1, 3, 4, 11, 12 | F2 (376) | SSR | Teqing (indica), YJCWR (O. rufipogon) | SHA1 | Lin et al. (2007) [3] |
| | PS | 1, 6 | CSSL (103) | SSR (132) | 93-11 (indica), Nipponbare (japonica) | qSH1-1, qSH6-1 | Zhu et al. (2009) [9] |
| | SS, AL, PS, BS | 1, 3, 4, 5, 8, 9 | DH (120) | SSR, STS (182) | Samgang (indica), Nagdong (japonica) | Qss1, Qss3, Qss4, Qss5-5, Qal1, Qal5-1, Qps8, Qbs9 | Qin et al. (2010) [10] |
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