The Whole Genome Assembly and Comparative Genomic Research of Thellungiella parvula (Extremophile Crucifer) Mitochondrion

Figure 4

A phylogenetic context based on amino acid sequences of the fifteen protein-encoding genes (atp1, atp9, ccmB, cob, cox1, cox3, nad1, nad3, nad4, nad4L, nad6, nad7, nad9, rps3, and rps4) of twenty-one species (Brassica napus, Brassica rapa subsp. campestris, Brassica juncea, Raphanus sativus, Brassica carinata, Thellungiella parvula, Arabidopsis thaliana, Carica papaya, Vigna radiata, Citrullus lanatus, Cucumis sativus, Cucurbita pepo, Nicotiana tabacum, Silene latifolia, Beta vulgaris subsp. vulgaris, Beta vulgaris subsp. maritima, Oryza sativa Indica, Sorghum bicolor, Tripsacum dactyloides, Zea perennis, and Cycas taitungensis). These conserved genes were aligned with ClustalW and the phylogenetic tree was constructed using the Neighbor-Joining method in MEGA 6.