The Whole Genome Assembly and Comparative Genomic Research of Thellungiella parvula (Extremophile Crucifer) Mitochondrion

Table 2

Gene profile and organization of the Thellungiella parvula mitochondrial genome.

Gene/elements	Strand	Position	Size (bp)	Start codon	Stop codon	Amino acid	Anticodon	Read depth
tRNA	H	832–914	83	—	—		GTA	34.8
Nad2	—	1458–37186	1467	ATG	TAA	493	—	38.025
Nad4	—	9133–17081	1488	ATG	TGA	493	—	34.8
Rpl2	L	20135–22926	1050	ATG	TGA	349		34.8
Atp9	—	27712–87567	917	ATG	TGA	169		35.45
rrnS	H	158451–160299	1849	—	—	—	—	40.2
ccmC	H	30512–31255	744	ATG	TGA	247	—	34.8
Rps4	L	38009–39097	1089	ATG	TAA	362	—	33.9
Nad7	—	43566–43827	1185	ATG	TAG	394	—	33.9
Atp8	L	51211–51687	477	ATG	TGA	158	—	31.2
Nad6	H	57368–57985	618	ATG	TAA	205	—	37.9
CcmFn-1	—	58827–60048	1179	ATG	TAG	392	—	36.1
CcmFn-2	H	213390–214040	651	ACG	TAG	216	—	37.9
Nad1	—	63688–249532	978	ACG	TAA	325	—	37.68
Cox3	L	68658–69455	798	ATG	TGA	265	—	36.1
tRNA	L	71129–71202	74	—	—	—	GCC	36.1
CcmFc	—	71321–73632	1359	ATG	TAA	452	—	36.1
Cox2	H	80299–82430	783	ATG	TAA	260	—	36.1
tRNA	L	91957–92043	87	—	—	—	GCT	36.1
cob	L	92354–93535	1182	ATG	TGA	393	—	36.1
Rpl5	L	95345–95902	558	ATG	TAA	185	—	36.1
Rpl16	L	96020–96547	528	ACG	TAA	178	—	36.1
Rps3	L	96438–97964	1527	ACG	TAG	508	—	36.1
tRNA	H	106353–106439	86	—	—	—	GCT	36.1
Rps12	L	116115–116492	378	ATG	TGA	125	—	36.1
Nad3	L	116538–116897	360	ATG	TAA	119	—	36.1
tRNA	H	118042–118114	73	—	—	—	TTT	36.1
CcmB	H	119597–120217	621	ATG	TAA	206	—	36.1
tRNA	H	123824–123897	74	—	—	—	GTC	36.1
Rrn26	H	130530–133703	3174	—	—	—	—	56.1
tRNA	H	139455–139528	74	—	—	—	GTG	40.2
tRNA	H	139709–139780	72	—	—	—	TTC	40.2
tRNA	H	139828–139915	88	—	—	—	GCT	40.2
trnfM	H	144494–144567	74	—	—	—	CAT	40.2
tRNA	H	153356–153428	73	—	—	—	CAT	40.2
Rrn5	H	160405–160523	119	—	—	—	—	40.2
Nad5	—	167199–206340	2009	ATG	TAA	662	—	56.46
matR	L	170736–172709	1974	ATG	TAG	757	—	40.2
Atp1	H	178158–179681	1524	ATG	TAG	507	—	40.2
tRNA	H	188375–188455	81	—	—	—	CAT	33.9
Rps7	H	189123–189569	447	ATG	TAA	148	—	33.9
tRNA	H	195438–195508	71	—	—	—	GCA	33.9
tRNA	L	195611–195685	75	—	—	—	TGG	33.9
tRNA	H	195757–195828	72	—	—	—	TTC	33.9
tRNA	H	198814–198898	85	—	—	—	CAA	33.9
tRNA	H	201484–201557	74	—	—	—	CCA	35.5
Nad9	L	209345–209917	573	ATG	TAA	190	—	37.9
tRNA	H	216365–216436	72	—	—	—	TTG	37.9
Atp6	L	223161–223604	444	ATG	TAA	147	—	37.9
Atp4	L	231218–231796	579	ATG	TAA	192	—	33.3
Nad4L	L	232069–232371	303	ATG	TAA	100	—	33.3
Cox1-1	L	251655–252425	771	ATG	TAA	256	—	35.8
Cox1-2	L	250843–251604	762	ATG	TAA	253	—	35.8
tRNA	H	255697–255768	72	—	—	—	GTT	37.1