The Whole Genome Assembly and Comparative Genomic Research of Thellungiella parvula (Extremophile Crucifer) Mitochondrion

Table 4

Distribution of SSRs in the mitogenome of T. parvula.

Type	SSR	Number of repeats	Start	End	Location
Monomer	T	9	763	771	—
	A	8	2074	2081	Nad2(intron)
	A	8	10932	10939	Nad4(intron)
	C	8	12096	12103	Nad4(intron)
	T	10	12253	12262	Nad4(intron)
	C	9	14435	14443	Nad4(intron)
	A	11	17525	17535	IGS(nad4, rpl2)
	T	10	19173	19182	IGS(nad4, rpl2)
	A	11	20944	20954	Rpl2(intron)
	A	8	25135	25142	IGS(rpl2, atp9)
	T	8	27558	27565	IGS(rpl2, atp9)
	C	11	35502	35512	Nad2(intron)
	C	10	39837	39846	IGS(rps4, nad7)
	A	10	43506	43515	IGS(nad4, rpl2)
	A	9	46361	46369	Nad7(intron)
	G	9	47843	47851	Nad7(intron)
	T	8	55038	55045	IGS(nad6, atp8)
	T	12	59173	59184	CcmFn1(intron)
	T	11	60629	60639	IGS(ccmFn1, nad1)
	T	8	63060	63067	IGS(ccmFn1, nad1)
	C	8	65079	65086	IGS(cox3, nad1)
	A	8	69152	69159	Cox3
	T	9	70078	70086	IGS(cox3, trnG-GCC)
	A	8	70989	70996	IGS(cox3, trnG-GCC)
	T	8	71627	71634	ccmFC
	T	8	73508	73515	ccmFC
	T	8	73782	73789	IGS(ccmFC, cox2)
	T	8	83553	83560	IGS(cox2, atp9)
	A	9	85876	85884	IGS(cox2, atp9)
	T	8	92114	92121	IGS(cob, trnS-GCT)
	A	9	94360	94368	IGS(cob, rpl5)
	T	8	96474	96481	Rpl16
	T	9	97650	97658	IGS(rps3, trnS-GCT)
	G	11	99474	99484	IGS(rps3, trnS-GCT)
	A	8	106875	106882	IGS(rps12, trnS-GCT)
	T	8	107254	107261	IGS(rps3, trnS-GCT)
	T	8	107957	107964	IGS(rps3, trnS-GCT)
	C	8	117336	117343	IGS(nad3, trnK-TTT)
	T	8	134167	134174	IGS(Rrn26, trnH-cp)
	T	8	137531	137538	IGS(Rrn26, trnH-cp)
	T	9	153501	153509	IGS(rrnS, trnM-cp)
	T	9	154495	154503	IGS(rrnS, trnM-cp)
	C	8	156682	156689	IGS(rrnS, trnM-cp)
	G	8	158985	158992	rrnS
	T	8	160651	160658	IGS(rrn5, nad5)
	G	9	166753	166761	IGS(rrn5, nad5)
	A	10	173435	173444	Nad5(intron)
	A	8	174660	174667	Nad5(intron)
	T	8	178106	178113	IGS(nad1, atp1)
	T	8	179843	179850	IGS(atp1, trnI-CAT)
	A	8	180779	180786	IGS(atp1, trnI-CAT)
	T	8	194226	194233	IGS(rps7, trnC-MT)
	A	11	195829	195839	IGS(trnE-TTC, trnL-CAA)
	T	9	210120	210128	IGS(nad9, ccmFn2)
	A	8	212337	212344	IGS(nad9, ccmFn2)
	G	10	231222	231231	Atp4
	T	8	233295	233302	IGS(nad4L, nad5)
	A	8	234008	234015	IGS(nad1, nad5)
	A	8	234745	234752	IGS(nad1, nad5)
	T	8	238579	238586	IGS(nad4L, nad5)
	G	9	245887	245895	IGS(nad4L, nad5)
	A	10	250105	250114	IGS(nad1, cox1)
Trimer	AAG	12	27383	27394	IGS(rpl2, atp9)
	AAC	12	78537	78548	IGS(ccmFC, cox2)
	AAG	12	80142	80153	IGS(ccmFC, cox2)
	ACA	12	86535	86546	IGS(atp9, cox2)
	AAT	12	87593	87604	IGS(atp9, trnS-GCT)
	CTT	21	134442	134462	IGS(rrn26, trnH-cp)
Pentamer	GTTCT	15	10356	10370	Nad4(intron)
	ATATG	15	52871	52885	IGS(atp8, nad6)
	TAATA	15	101932	101946	IGS(rps3, trnS-GCT)
	ATAGA	15	143566	143580	IGS(trnfM, trnS-GCT)