Transcriptome Analyses Reveal Lipid Metabolic Process in Liver Related to the Difference of Carcass Fat Content in Rainbow Trout (Oncorhynchus mykiss)
Table 2
The descriptive statistics of the raw RNA-seq datasets for all of the six individuals sequenced in the present study.
Sample
Raw reads
Clean reads
Clean bases
Error (%)
Q20 (%)
Q30 (%)
GC (%)
H1_1
17429887
16907974
2.11G
0.03
96.27
92.45
50.25
H1_2
17429887
16907974
2.11G
0.04
93.31
87.75
50.2
H2_1
18051923
17574994
2.2G
0.03
96.18
92.3
50.37
H2_2
18051923
17574994
2.2G
0.04
93.56
88.15
50.33
H3_1
16777106
16241788
2.03G
0.03
96.16
92.23
50.07
H3_2
16777106
16241788
2.03G
0.04
93.33
87.71
50.04
L1_1
18535584
17957775
2.24G
0.03
96.41
92.72
49.7
L1_2
18535584
17957775
2.24G
0.04
93.97
88.84
49.66
L2_1
18083733
17537741
2.19G
0.03
96.26
92.43
49.72
L2_2
18083733
17537741
2.19G
0.04
94.03
88.89
49.68
L3_1
19420929
18772655
2.35G
0.03
96.24
92.41
50.08
L3_2
19420929
18772655
2.35G
0.04
93.66
88.3
50.05
Notes: sample name: H1 is the first fish in high carcass fat content group and so on; L1 is the first fish in high carcass fat content group and so on; H1_1 is the left-end reads, H1_2 is the right-end reads; the descriptive statistics for the individual H1 is the sum of H1_1 and H1_2 and so on.
