Transcriptome Analyses Reveal Lipid Metabolic Process in Liver Related to the Difference of Carcass Fat Content in Rainbow Trout (Oncorhynchus mykiss)

Table 3

Comparison of fold differences in 14 differentially expressed genes detected by transcriptome sequencing and real-time RT-PCR analyses.

Standard nomenclature	Fold change by real-time RT-PCR	Fold change by RNA-seq	Gene annotation
GSONMT00021034001	0.25 ± 0.03	0.18	Heat shock 70 kDa protein
GSONMT00026574001	1.40 ± 0.12	2.70	Lipopolysaccharide-binding protein/bactericidal permeability-increasing protein
GSONMT00028411001	4.84 ± 0.35	4.44	Fatty acid-binding protein, intestinal putative mRNA
GSONMT00029574001	36.83 ± 2.30	17.70	Cytochrome P450
GSONMT00032762001	33.50 ± 1.95	35.73	Fatty acid-binding protein 10-A, liver
GSONMT00051137001	6.05 ± 0.50	4.27	Insulin-like growth factor binding protein 1a
GSONMT00051158001	1.50 ± 0.15	3.03	Peroxisome proliferator activated receptor alpha
GSONMT00054447001	0.18 ± 0.04	0.18	Acetyl-CoA acetyltransferase, cytosolic
GSONMT00060652001	2.22 ± 0.15	2.66	Peroxisome proliferator activated receptor beta
GSONMT00062349001	0.13 ± 0.02	0.19	StAR-related lipid transfer protein
GSONMT00064682001	2.80 ± 0.15	2.76	Insulin-like growth factor binding protein, acid labile subunit
GSONMT00070501001	0.26 ± 0.03	0.11	Growth hormone receptor isoform 1
GSONMT00077785001	3.22 ± 0.19	17.14	Adiponectin
GSONMT00082167001	0.71 ± 0.05	0.29	Insulin-induced gene 1

Note: the standard nomenclature for rainbow trout according to GBrowse-2.54 of rainbow trout genome project database.