International Journal of Genomics / 2016 / Article / Tab 3

Research Article

Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information

Table 3

Comparisons of S. cerevisiae.

ToolsSensitivitySpecificityAccuracy-measureMCCKappa

CPC.web0.97340.96870.96970.93270.91450.9132
CPAT.web10.79800.84160.73160.67850.6304
CNCI0.97580.67600.74070.61900.53770.4598
PLEK0.99030.55070.64560.54680.44910.3407
Lncident10.86200.89180.79960.75780.7295
CPAT.train10.94870.95970.91470.89420.8886
PLEK.train0.97580.80530.84210.72740.66820.6262
Lncident.train10.96800.97490.94510.93120.9289

Lncident presented the best result on S. cerevisiae dataset. with model trained on human. suffix of “train” means the tools with model trained on C. elegans.

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