International Journal of Genomics / 2016 / Article / Tab 4

Research Article

Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information

Table 4

Running time on human dataset.

ToolsRunning time
Stand-aloneWeb server

CPC5 days 4 h 37 min 43 sAbout 1 day
CPAT16 s
CNCI37 min 53 s
PLEK3 min 04 s
Lncident3 min 01 sAbout 12 min

Test on Intel® Core™ i7-2600 CPU at 3.40 GHz and 8 GB RAM.
The test dataset contains 4,000 mRNAs and 4,000 lncRNAs. is hard to calculate precise running time of testing on web server; thus, we can only obtain a rough approximation. We omitted the result of CPAT web server, because only file size less than 10 MB is allowed, and when we split our file, we found the average error is too serious to accept.

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