HaVec: An Efficient de Bruijn Graph Construction Algorithm for Genome Assembly

Table 6

Results for minia.

File name	k size	Min abundance	Estimated genome size	Runtime (AVG)	Runtime (SD)	Memory total (AVG)	Memory total (SD)
50 m.fa	27	1	2,189,163,749	37637.66666	1064.9044	6589.0	0
50 m.fa	32	1	2,189,163,749	33418.33333	477.8162	6604.0	0
Ecoli_MG1655_s_6_1_bfast.fasta	27	1	13,795,561	100	1.0000	251.0	0
Ecoli_MG1655_s_6_1_bfast.fasta	32	1	13,795,561	100.66667	1.5275	251.0	0
Ecoli_MG1655_s_6_2_bfast.fasta	27	1	133,958,572	1787	35.7911	1813.0	0
Ecoli_MG1655_s_6_2_bfast.fasta	32	1	133,958,572	1753	13.0767	1814.0	0
Human1_95G_CASAVA1.8a2_NCBI37_18Jan11_chr19.sorted.fasta	27	1	222,896,820	2229.66667	21.9393	2551.0	0
Human1_95G_CASAVA1.8a2_NCBI37_18Jan11_chr19.sorted.fasta	32	1	222,896,820	2075	7.5498	2553.0	0
Human1_95G_CASAVA1.8a2_NCBI37_18Jan11_chr21.sorted.fasta	27	1	138,568,143	1083.33333	8.5049	1697.0	0
Human1_95G_CASAVA1.8a2_NCBI37_18Jan11_chr21.sorted.fasta	32	1	138,568,143	1116.33333	15.1767	1698.0	0
NA19240_GAIIx_100_chr21.fasta	27	1	113,775,137	836.33333	7.5719	1935.0	0
NA19240_GAIIx_100_chr21.fasta	32	1	113,775,137	870.33333	9.0185	1935.0	0
dataset_1_7GB.fa	27	1	138,568,143	1084	10.1489	1697.0	0
dataset_1_7GB.fa	32	1	138,568,143	1103.66667	6.6583	1698.0	0
dataset_1_9GB.fa	27	1	113,775,137	841	9.5394	1935.0	0
dataset_1_9GB.fa	32	1	113,775,137	864.66667	7.5719	1935.0	0