Research Article

MicroRNA and Putative Target Discoveries in Chrysanthemum Polyploidy Breeding

Table 2

Target genes identified in chrysanthemum embryo.

miRNAID of target genesNE12_FPKMNE18_FPKMAE18_FPKMNr/Nt annotation

miR159aUnigene13056_All22.877614.050114.212850S ribosomal protein
miR160aCL8743.Contig2_All5.26587.40085.3906Auxin response factor
miR160aUnigene9514_All17.71318.564412.0923Auxin response factor 10
miR164cUnigene24220_All1.03976.661211.3245NAC transcription factor
miR166aUnigene33904_All2.13793.85971.4223Homeobox-leucine zipper protein
miR167c-3pCL15007.Contig2_All16.057129.348435.2898AMP-activated protein kinase
miR169bCL3042.Contig2_All2.95118.09417.2676Nuclear transcription factor Y
miR169bCL3042.Contig3_All2.51077.06315.6611Nuclear transcription factor Y
miR169bUnigene26767_All11.851930.080426.5044Nuclear transcription factor Y
miR172cUnigene23005_All1.8273.09814.1985Floral homeotic protein APETALA2
miR2653aUnigene7445_All0.43874.618126.8109Solanum lycopersicum RAP2.6-like protein gene
miR2661Unigene35846_All1.88224.57980.9556ATP binding protein
miR2868Unigene46_All10.110817.979328.7056Protein NLP6-like
miR396a-3pCL936.Contig4_All10.61349.88297.7245MAK16 protein-like protein
miR397aUnigene30076_All29.732313.912513.4372Glucan endo-1,3-beta-glucosidase 7-like
miR397aUnigene4252_All1.97325.40822.1149Glycine max laccase-4-like
miR403CL516.Contig5_All26.117643.392545.8309Argonaute protein group
miR414CL4550.Contig3_All12.719519.8898.8036ADP-glucose pyrophosphorylase small subunit 2
miR414CL2586.Contig3_All2.68525.66277.2585ATP binding protein
miR414CL12204.Contig1_All35.141215.800113.8476CAPIP2
miR414Unigene19498_All3.00412.92031.0519F-box protein At5g07610
miR414Unigene12916_All31.227455.686366.4644F-box/LRR-repeat protein
miR414Unigene10707_All0.1582.70394.4112Glutamate receptor 2.3
miR414CL7369.Contig4_All15.133111.867723.1584Glycine max surfeit locus protein 2-like
miR414CL4274.Contig1_All0.11415.5741.6227Histone H2B.2
miR414Unigene32715_All2.80179.38132.9311Minichromosome maintenance factor
miR414CL7491.Contig4_All56.83823.805728.7017NA
miR414CL7491.Contig3_All40.342515.275719.8302NA
miR414CL7491.Contig1_All40.176918.414917.7948Proline-rich protein
miR414CL11069.Contig1_All1.5942.20674.0463Protein NLP6-like
miR414Unigene30228_All1.79634.97349.0057Uncharacterized protein
miR414Unigene31458_All33.3706106.7705151.1735Uncharacterized protein
miR414Unigene28799_All0.66221.22.6895Uncharacterized protein
miR414CL15100.Contig1_All2.759911.790810.9824Uncharacterized protein
miR414CL5368.Contig4_All23.391871.71984.0485Uncharacterized protein
miR414CL5528.Contig1_All3.13584.97871.9595Uncharacterized protein
miR414Unigene35998_All2.94440.26950.8154Uncharacterized protein
miR414Unigene19911_All3.76452.68470.7964Uncharacterized protein
miR414Unigene25838_All2.17868.707524.971Transcription factor WRKY
miR414Unigene27592_All109.281189.670672.8937ATP synthase subunit O
miR5021CL13854.Contig1_All20.240911.18049.5598ATP binding protein
miR5021Unigene49221_All0.47910.80393.8915NA
miR5021Unigene8421_All8.16326.98483.84PAPS-reductase-like protein
miR5021 miR5293CL11776.Contig1_All39.39934.238634.2098Uncharacterized protein
miR5049cCL559.Contig1_All33.847933.526845.5856Chrysanthemum x morifolium DREBa
miR5049c miR5052aUnigene1703_All1.45032.19024.4178NA
miR5077CL14985.Contig3_All2.67744.74555.6638Global transcription factor group
miR5227CL4864.Contig1_All58.291317.220911.1415ATP-citrate synthase beta chain protein
miR5270aUnigene3852_All2.52765.026113.2176Uncharacterized protein
miR5293CL7596.Contig2_All999.12822027.78282112.3254Dehydrin family protein
miR5293Unigene16818_All9.1697.10123.1716Glycine max reticulon-like protein B21-like
miR5293Unigene31007_All34.27532.3294106.0944Uncharacterized protein
miR5298bUnigene4147_All12.773420.358742.7602Uncharacterized protein
miR5298b miR5380aCL5088.Contig2_All22.250420.752920.0829Nucleosome assembly protein 1-like
miR5380aUnigene7407_All6.097788.9232149.3867Cytochrome P450
miR5380aUnigene19991_All0.60693.0551.0955Ferric reduction oxidase
miR5215CL965.Contig5_All00.56611.5225Disease-resistance protein NRSA1
miR5215 miR5373Unigene21756_All5.96455.66896.2018ATP binding protein
miR5373CL561.Contig3_All39.076227.12225.8912Glycyl-tRNA synthetase 1
miR5640Unigene11631_All1.352938.1984.7781Glutathione S-transferase 1
miR5641Unigene3971_All21.850214.301711.807Glycosyl transferase
miR5641Unigene7799_All1.28211.63845.4077RPL5A-related protein
miR6111-5pUnigene29644_All5.341311.375217.9804Cytokinin-regulated kinase 1
miR6220-3p miR818aCL1844.Contig1_All9.91433.94893.9549Benzoyl CoA benzoic acid benzoyltransferase
miR845b-5pUnigene2353_All10.113340.369261.9776NA
miR858bUnigene2183_All19.35489.29955.5141Transcription factor MYB11