Additional Evidence for DDB2 T338M as a Genetic Risk Factor for Ocular Squamous Cell Carcinoma in Horses

Table 2

Number of variants identified and prioritized for further evaluation based on three filtering parameters and mapping to EquCab2.

Variants from filtering		Unique to FreeBayes	Unique to SAMtools	Identified by both variant callers	Prioritized variants
Filter 1	High	0	0	0	0
	Moderate	0	0	0	0
	Low	0	0	0	0
	Modifier	3	1	1	4
Filter 2	High	0	0	0	0
	Moderate	0	1	1	2
	Low	0	0	5 (4—synonymous)	1
	Modifier	38	47	299	17
Filter 3	High	0	0	0	0
	Moderate	27	28	25	25
	Low	2	3	66 (55—synonymous)	11
	Modifier	316	415	4759	0