Discovery of Functional SNPs via Genome-Wide Exploration of Malaysian Pigmented Rice Varieties

Table 1

Summary of sequence reads and mapping statistics in Bali, PH9, MRM16, and MRQ100 genome.

	Bali	PH9	MRM16	MRQ100
Total reads (bp)	101,710,572	99,980,328	98,764,058	99,998,624
Number of clean reads (bp)	99,865,228 (98.18%)	99,380,446 (99.40%)	98,078,122 (99.30%)	94,428,632 (99.43%)
Genome coverage (30×)	88.59%	88.45%	88.45%	88.49%
Total mapped reads	96,479,796	95,971,696	94,870,967	91,170,844
Percentage of total mapped reads	96.61%	96.57%	96.73%	96.55%