Research Article
Genotyping for Blast (Pyricularia oryzae) Resistance Genes in F2 Population of Supa Aromatic Rice (Oryza sativa L.)
Table 1
The primer sequences for SNP and InDel markers used in genotyping [
19].
| | Gene | Marker ID | Primer name | Primer sequence | Favourable allele | Unfavourable allele |
| | Pi9 | snpOS0007 | InDel-F | CGCCGGTTGATAAGTAAAAGCT
TGATTATGTTTTTTATGTGGGG | — | CGATGGTTTC | | InDel-R | CAAGAACTAATATCTACCCATGG | | | | Pita | snpOS0006 | SNP-F | CCGTGGCTTCTATCTTTACCTG
CCGTGGCTTCTATCTTTACCTT | C | A | | SNP-R | AGTCAGGTTGAAGATGCATAGA | | | | badh2 | snpOS0022 | InDel-F | ACATAGTGACTGGATTAGGTTCTG
CTGGTAAAAAGATTATGGCTTCA | TATAT | AAAAGATTATGGC | | InDel-R | CATCAACATCATCAAACACCACT | | |
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SNP: single-nucleotide polymorphism; F: forward primer; R: reverse primer; InDel: insertion/deletion.
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