Comprehensive Stress-Based De Novo Transcriptome Assembly and Annotation of Guar (Cyamopsis tetragonoloba (L.) Taub.): An Important Industrial and Forage Crop

Table 2

Results of the trimming of adapters and low-quality reads with Trimmomatic and corrected bases with Rcorrector for each library sequenced.

Treatment/replicate	Input read (pairs)	Both surviving	Forward only surviving	Reverse only surviving	Dropped	Corrected bases
C1	18,231,374	16,315,223 (89.49%)	1,104,286 (6.06%)	343,131 (1.88%)	468,734 (2.57%)	3,367,429
C2	18,547,523	16,383,381 (88.33%)	1,312,083 (7.07%)	329,272 (1.78%)	522,787 (2.82%)	3,308,267
C3	19,216,423	17,119,827 (89.09%)	1,243,179 (6.47%)	342,799 (1.78%)	510,618 (2.66%)	3,422,805
D1	15,933,349	13,404,773 (84.13%)	1,716,786 (10.77%)	360,810 (2.26%)	450,980 (2.83%)	2,449,953
D2	18,373,983	16,366,657 (89.08%)	1,198,202 (6.52%)	328,085 (1.79%)	481,039 (2.62%)	3,222,892
D3	19,268,634	17,026,208 (88.36%)	1,387,280 (7.20%)	311,715 (1.62%)	543,431 (2.82%)	3,485,911
H1	17,768,058	15,809,295 (88.98%)	1,175,640 (6.62%)	333,378 (1.88%)	449,745 (2.53%)	3,259,472
H2	17,534,187	15,606,157 (89.00%)	1,141,252 (6.51%)	362,422 (2.07%)	424,356 (2.42%)	3,069,003
H3	19,416,955	17,451,837 (89.88%)	1,106,763 (5.70%)	390,096 (2.01%)	468,259 (2.41%)	3,538,389
S1	18,692,590	16,712,479 (89.41%)	1,140,121 (6.10%)	353,534 (1.89%)	486,456 (2.60%)	3,293,908
S2	17,960,884	15,972,952 (88.93%)	1,192,753 (6.64%)	307,947 (1.71%)	487,232 (2.71%)	3,072,708
S3	17,236,963	15,340,193 (89.00%)	1,120,364 (6.50%)	321,744 (1.87%)	454,662 (2.64%)	3,068,499
Total	218,180,923	193,508,982 (88.69%)	14,838,709 (6.80%)	4,084,933 (1.87%)	5,748,299 (2.63%)	38,559,236

C: control; D: drought stress; S: salinity stress; H: heat stress; numbers 1, 2, & 3 beside the treatment name: indicates biological replicate number.