Comparative Transcriptome Analysis in Eggplant Reveals Selection Trends during Eggplant Domestication

Table 1

Information of RNA-seq data for the six eggplants.

Sample	Raw reads	Clean reads	GC (%)	Phred quality Q20 (%)		Total mapped^a
				-1	-2
AET_SG	61795572	55580924	41.99	97.32	95.85	39337841 (70.78%)
INT_2006	74782564	67387058	42.51	97.21	96.03	48949822 (72.64%)
MEL_HZHQ	65869048	58960600	41.68	97.28	96.09	51659443 (87.62%)
MEL_LYQ	66197610	59365428	42.35	97.27	95.81	52647559 (88.68%)
MEL_S58	75562708	67428684	41.68	97.3	95.93	58745699 (87.12%)
SIS_2007	82147678	72679508	42.45	97.18	96.10	20027221 (27.56%)
Total	426355180	381402202

^aThe number of high-quality reads mapped using TopHat and the ratio with the clean reads.