Research Article
Comparative Transcriptome Analysis in Eggplant Reveals Selection Trends during Eggplant Domestication
Table 1
Information of RNA-seq data for the six eggplants.
| Sample | Raw reads | Clean reads | GC (%) | Phred quality Q20 (%) | Total mappeda | -1 | -2 |
| AET_SG | 61795572 | 55580924 | 41.99 | 97.32 | 95.85 | 39337841 (70.78%) | INT_2006 | 74782564 | 67387058 | 42.51 | 97.21 | 96.03 | 48949822 (72.64%) | MEL_HZHQ | 65869048 | 58960600 | 41.68 | 97.28 | 96.09 | 51659443 (87.62%) | MEL_LYQ | 66197610 | 59365428 | 42.35 | 97.27 | 95.81 | 52647559 (88.68%) | MEL_S58 | 75562708 | 67428684 | 41.68 | 97.3 | 95.93 | 58745699 (87.12%) | SIS_2007 | 82147678 | 72679508 | 42.45 | 97.18 | 96.10 | 20027221 (27.56%) | Total | 426355180 | 381402202 | | | | |
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aThe number of high-quality reads mapped using TopHat and the ratio with the clean reads.
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