Gene Identification and Characterization of Correlations for DEPs_DEGs Same Trend Responding to Salinity Adaptation in Scylla paramamosain

Figure 2

GO analysis and COG function classification of correlations for DEPs_DEGs_Same Trend. (a) Biological process; (b) cellular component; (c) molecular function; (d) COG function annotation and classification. GO analysis was performed with the correlative proteins using Blast2GO [49]. COGs were delineated by comparing protein sequences encoded in complete genomes, representing major phylogenetic lineages. Each cog consists of individual proteins or groups of paralogs from at least three lineages and thereby corresponds to an ancient conserved domain. Each cog consists of individual orthologous proteins or orthologous sets of paralogs from at least three lineages. Orthologs typically have the same function, allowing transfer of functional information from one member to an entire cog. This relation automatically yields a number of functional predictions for poorly characterized genomes. The COGs comprise a framework for functional and evolutionary genome analysis [50, 51].

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